Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10e16
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 32 0.51
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.1
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269 29 3.6
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 28 6.3
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 28 6.3
03_01_0245 + 1916718-1917443,1917534-1917719 28 6.3
09_04_0279 - 16349156-16349788,16352409-16353344 28 8.3
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.3
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 188 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI--DGFHDNI 310
+ ++T K + D+I +KV+ F ++E+E+ D DG + NI
Sbjct: 146 VEAITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSNDGVNANI 188
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 230 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 328
+KS V++ L +EY+ I G HD+IQY DE
Sbjct: 12 VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43
>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
Length = 658
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/86 (26%), Positives = 44/86 (51%)
Frame = +2
Query: 17 LYHCKMCVIFPVEIDVSQTVIRDCHVDEQTRELVYINKIMNTQLTKPVLMMFNISGPIRS 196
LY + V+F +I S+ V+ ++ +T + Y ++ +++ L MF +GP+ S
Sbjct: 535 LYFIEQDVLFSFDIR-SKRVLMSKSLEMRT-DFCYPSQFLHSWLLPS--NMFEENGPVES 590
Query: 197 VTRKNNDLRDRIKSKVDEQFDQLERE 274
+NDL ++ S DE+ D + E
Sbjct: 591 DKLPSNDLDEQSDSDDDEESDNEDDE 616
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 214 VVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGH 62
++ R+A +VK + FC + V N++N+H + L+ I N+ H
Sbjct: 229 LLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQKVH 279
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 227 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 406
R+K ++ E +L + +++ N++ ++ S+ GSVLK+K KIL D
Sbjct: 35 RLKEELAETSLRLRQMRGEELHRL--NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL 92
Query: 407 DKKSIETYEK 436
++K ++ E+
Sbjct: 93 ERKRMQLIEE 102
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -1
Query: 614 RTRKVPCR*FREQTAQ*LC-YQSGCTQKIALGCCRSQIPASTRIP--PRSSR-CVCRPIG 447
RT K PC TA+ LC +S ++ +GC +S PA+ R P P + R C R G
Sbjct: 95 RTPKTPCT----PTARRLCGVRSRTPRRGQVGCFQSSAPAAARTPRTPTTQRACYVRGTG 150
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 98 EQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREY 277
E EL ++N + N P L ++ G ++ + + + L ++ VDE ++ +RE
Sbjct: 218 ELLEELFFLNGVFNVGDQIPWLEWLDLQGYVKRMKKVSKALDQLLEHVVDEHSERRQREG 277
Query: 278 SDKIDG 295
+ + G
Sbjct: 278 NGFVAG 283
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 592 VNFVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHV 476
V F+ K +NF + V ++R +V+ ++K + H YRH+
Sbjct: 422 VGFMRKARHNFRLDEVGIRRQLKIVSQIIKRKDSHLYRHL 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,864
Number of Sequences: 37544
Number of extensions: 337720
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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