Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10e15
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 3e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 109 2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 98 4e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 81 7e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 81 9e-16
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 64 7e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 5e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 9e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 9e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 9e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 5e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 5e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.011
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.035
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.046
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.046
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.061
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.14
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.19
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.19
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.19
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.25
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.32
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.43
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.57
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.57
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.57
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.75
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.75
At3g31950.1 68416.m04046 hypothetical protein 31 0.75
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.75
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 0.99
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.99
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.3
At5g47430.1 68418.m05844 expressed protein 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.3
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At4g17410.1 68417.m02607 expressed protein 30 1.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.3
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.3
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.3
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.3
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.3
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.3
At5g61670.2 68418.m07738 expressed protein 29 3.0
At5g61670.1 68418.m07737 expressed protein 29 3.0
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 3.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 4.0
At5g21140.1 68418.m02524 expressed protein 29 4.0
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.0
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.0
At4g06479.1 68417.m00885 hypothetical protein 29 4.0
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 4.0
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.0
At2g31850.1 68415.m03889 expressed protein 29 4.0
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 4.0
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.3
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.3
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.3
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 5.3
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 5.3
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 7.0
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 7.0
At4g06526.1 68417.m00938 hypothetical protein 28 7.0
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.0
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 7.0
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 9.2
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 9.2
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 9.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (268), Expect = 3e-25
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 315
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 316 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 453
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 454 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 564
++ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +1
Query: 160 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 303
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 304 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 435
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 436 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 570
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 276
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 277 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 366
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 315
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.046
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 154 SSSVCYKCNRTGHFARECT 210
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 511 GTKTCYVCGKPGHISREC 564
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 109 bits (261), Expect = 2e-24
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 306
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 307 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 450
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 451 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 564
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 94.7 bits (225), Expect = 5e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +1
Query: 154 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 318
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 319 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 429
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 430 PEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 567
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 4e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +1
Query: 226 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 357
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 358 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 480
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 481 SGHISRNCPD--------GTKTCYVCGKPGHISREC 564
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 160 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 312
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 313 -ADRCYRCNGTGHIAREC 363
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 315
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 385 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 565 DEA 573
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 157 SSVCYKCNRTGHFARECT 210
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 160 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 339
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 340 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 516
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 517 KTCYVCGKPGHISREC 564
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 429
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 430 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 564
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Frame = +1
Query: 154 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 333
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 334 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 504
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 505 PD--GTKT---CYVCGKPGHISRECDEAR 576
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 79.0 bits (186), Expect = 3e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +1
Query: 160 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 321
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 322 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 483
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 484 GHISRNCPDG 513
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 81.0 bits (191), Expect = 7e-16
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +1
Query: 256 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 408
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 409 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 561
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 562 CDEARN 579
C + N
Sbjct: 194 CPDKFN 199
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +1
Query: 229 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 405
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 406 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 564
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +1
Query: 157 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 318
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 319 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 459
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 463 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 609
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 80.6 bits (190), Expect = 9e-16
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = +1
Query: 148 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 318
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 319 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 465
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 466 YNCNKSGHISRNCPDGTKTCYVCGK 540
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +1
Query: 382 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 525
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 526 YVCGKPGHISREC 564
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 64.5 bits (150), Expect = 7e-11
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +1
Query: 115 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 294
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 295 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 453
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 454 TQTCYNCNKSGHISRNCPDGTK 519
T CY CN SGH +R CP+ ++
Sbjct: 356 T-LCYRCNGSGHFARECPNSSQ 376
Score = 63.7 bits (148), Expect = 1e-10
Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 38/220 (17%)
Frame = +1
Query: 19 DGGWLPCYRSVINYNLFVNS*DN*SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFA 198
D GW+ CY + N + + + + E CY C +TGH A
Sbjct: 162 DAGWVSCYSCGEQGHTSFNC-PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220
Query: 199 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------CYRCNGTGHIAR 357
++C +G + C +C GH CK E + CY C GH+
Sbjct: 221 KDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL-- 272
Query: 358 ECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT----------QTCYNCN 477
C P SCY C + GH C +SAT CY C
Sbjct: 273 -CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCG 331
Query: 478 KSGHISRNCPDGTKT-----------CYVCGKPGHISREC 564
+ GH +R CP+ + CY C GH +REC
Sbjct: 332 EEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +1
Query: 157 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 336
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 337 GTGHIARECAQSPDEPS 387
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 385 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 565 -DEARN 579
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 154 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 279
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 468
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 469 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 564
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 393
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 394 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 528
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 50.8 bits (116), Expect = 9e-07
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 345
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 346 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 495
EC Q PD S T GH CP+ S + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 496 RNCPDGTKTCYVCGKPGHISREC 564
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 330
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 331 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 495
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 496 RNCPDGTKTCY 528
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 154 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 321
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 322 CYRCNGTGHIARECAQS 372
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 91 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 225
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Frame = +1
Query: 181 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 360
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 361 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 516
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 517 KT----CYVCGKPGHISREC 564
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 318
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 319 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 492
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 493 SRNCP 507
R CP
Sbjct: 373 VRTCP 377
Score = 39.9 bits (89), Expect = 0.002
Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 423
C C + GH C E ADR +RC G G H R C +S + + H
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324
Query: 424 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 588
C E G S T T N + SG S G T C C K GH R C +
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384
Query: 589 PPCL 600
CL
Sbjct: 385 DSCL 388
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 375
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +1
Query: 406 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 558
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 559 ECDEARN*PQP 591
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 47.6 bits (108), Expect = 8e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 319 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 429
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 373 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 504
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 157 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 306
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 375
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +1
Query: 406 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 558
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 559 ECDEARN*PQP 591
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 47.6 bits (108), Expect = 8e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 319 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 429
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 373 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 504
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 157 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 306
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 375
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +1
Query: 373 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 552
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 108
Query: 553 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 702
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 109 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 157
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 313 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 471
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 406 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 558
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 559 EC 564
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 330
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 375
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +1
Query: 373 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 552
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 119
Query: 553 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 702
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 120 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 168
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 313 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 471
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 406 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 558
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 559 EC 564
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 330
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 375
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = +1
Query: 373 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 552
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 149
Query: 553 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 702
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 150 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 198
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 313 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 471
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 406 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 558
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 559 EC 564
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 330
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 531
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 532 CGKPGH 549
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 322 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 483
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 484 GH 489
H
Sbjct: 96 DH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +1
Query: 457 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 576
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 345
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 346 H 348
H
Sbjct: 88 H 88
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 357
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 358 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 444
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 333
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 334 NGTGHIAREC 363
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 540
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 541 PGHISREC 564
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGG 219
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.046
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 511 GTKTCYVCGKPGHISRECDE 570
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.75
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 436 GGRESATQTCYNCNKSGHISRNCPDG 513
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 387
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 388 CYNCNKTGHIARNCPEGG 441
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 322 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 502 CPDG 513
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 303
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 385 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGG 219
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.061
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 511 GTKTCYVCGKPGHISRECDE 570
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 409 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 513
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 460 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 564
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +1
Query: 328 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 507
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 508 DGTKTCYVCGKPGHISRECDEARN 579
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 318
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGG 219
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.75
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 379 EPSCYNCNKTGHIARNCPEGG 441
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 283 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 381
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 400 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 318
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGG 219
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.75
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 379 EPSCYNCNKTGHIARNCPEGG 441
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 283 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 381
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 400 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +1
Query: 229 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 321
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSG 240
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 511 GTKTCYVCGKPGHISREC 564
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 519
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 211 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 363
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 255
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 211 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 306
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 223 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 363
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEG 438
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 523 CYVCGKPGHISRECDEAR 576
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 436 GGRESATQT--CYNCNKSGHISRNCPDG 513
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 255
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 211 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 306
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 223 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 363
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEG 438
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 523 CYVCGKPGHISRECDEAR 576
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 436 GGRESATQT--CYNCNKSGHISRNCPDG 513
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 255
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK 306
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 436 GGRESATQTCYNCNKSGHISRNC 504
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.75
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 319 RCYRCNGTGHIAREC 363
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGG 441
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 523 CYVCGKPGHISREC 564
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDC 303
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 349 IARECAQSP-DEPSCYNCNKTGHIARNCP 432
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 505 PDGTKTCYVCGKPGHISREC 564
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 166 CYKCNRTGHFAREC 207
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 166 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 255
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 214 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 306
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 439 GRESATQTCYNCNKSGHISRNC 504
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 319 RCYRCNGTGHIAREC 363
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 523 CYVCGKPGHISREC 564
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 507
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 432
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +1
Query: 340 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 471
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 472 CNKSGHISRNCPD 510
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +1
Query: 163 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 303
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.046
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +1
Query: 154 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 330
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 331 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 489
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 490 ISRNCPDG---TKTCYVCGKPGHISREC 564
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 429
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 430 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 564
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 30.7 bits (66), Expect = 0.99
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 8/160 (5%)
Frame = +1
Query: 55 NYNLFVNS*DN*SLNDRYISVLSAQE--FSKPIAMSSSV----CYKCNRTGHFARECT-- 210
+Y L NS D+ +N+ Y S +S + V CY+C GH + C
Sbjct: 438 SYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIK 497
Query: 211 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSC 390
+S + Q + T + + + + NG + A P
Sbjct: 498 LQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NGGSFMDESYATVPISIDV 553
Query: 391 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 510
N + G + + CY C + GH+S CP+
Sbjct: 554 TNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.061
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 256 EKCFKCNRTGHFARDC 303
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGG 219
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.32
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 379 EPSCYNCNKTGHIARNCPEGG 441
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 436 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 573
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 316 DRCYRCNGTGHIAREC 363
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 388 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 513
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +1
Query: 322 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 456
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 394 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 519
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 469 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 573
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEA 315
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 445 ESATQTCYNCNKSGHISRNCP 507
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 523 CYVCGKPGHISREC 564
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQGGVVS 228
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 375 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 518
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 319 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 441
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 442 RESATQTCYNCNKSGHISRNCPD 510
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 520 TCYVCGKPGHISRECDEAR 576
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 385 SCYNCNKTGHIARNCPE 435
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDCK 306
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 349 IARECAQSPDEPS-CYNCNKTGHIARNC 429
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 430 PEGGRESATQTCYNCNKSGHISRNC 504
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 493 SRNCPDGTKTCYVCGKPGHISREC 564
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.99
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 163 VCYKCNRTGHFAREC 207
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 262 CFKCNRTGHFARDC--KEEAD 318
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 388 CYNCNKTGHIARNC 429
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 322 CYRCNGTGHIAREC 363
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 483
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 441
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 379 EPSCYNCNKTGHIARNCPEGGRESATQ 459
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 460 TCYNCNKSGHISRNCPDGTKTCYV 531
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 375 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 518
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 375 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 518
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 328 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 495
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 496 RNCP 507
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +1
Query: 253 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 363
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 477
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 478 KSGHISRNCPD----GTKTCYVCGKPGHI 552
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 427 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 573
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.99
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 471
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 472 CNKS 483
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 463 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 564
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 507
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 463 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 564
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 507
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 328 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 441
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 163 VCYKCNRTGHFARECTQGG 219
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 454 TQTCYNCNKSGHISRNCPD 510
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGG 441
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 136 SKPIAMSSSVCYKCNRTGHFAREC 207
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 316 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 489
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 490 ISRNC 504
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 163 VCYKCNRTGHFARECTQGG 219
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 349 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 561
S N N + + G + + + +S R+ G K C++CG+ GH +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173
Query: 562 CDEARN*PQP 591
C +RN +P
Sbjct: 174 C-PSRNSEKP 182
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +1
Query: 355 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 501
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 502 CPDGTKTCYVCG 537
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 454 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 546
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 444
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 519
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 393
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 444
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 519
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 393
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSP 375
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 262 CFKCNRTGHFARDC 303
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 166 CYKCNRTGHFARECTQG 216
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 409 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 507
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 537
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +1
Query: 469 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 594
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 234
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 307 EEADRCYRCNGTGHIARECAQS 372
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 376 DEPSCYNCNKTGHIARNCPE 435
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 463 CYNCNKSGHISRNCP 507
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 303
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 483
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 484 GHIS 495
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +1
Query: 181 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 333
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 334 NGTGHIARECA 366
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 459
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 460 TCYNCNKSGHISRNCP 507
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 459
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 460 TCYNCNKSGHISRNCP 507
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 214 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 303
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 463 CYNCNKSGHISRNCPDGTKT 522
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 388 CYNCNKTGHIARNCP 432
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 151 MSSSVCYKCNRTGHFAREC 207
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 241 FNRQREKCFKCNRTGHFARDCKEEADR 321
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 355 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 534
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 535 GKPGHISR 558
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 483
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 484 GHISRNCP 507
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 304 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 483
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 484 GHISRNCP 507
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +1
Query: 322 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 429
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +1
Query: 382 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 504
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +1
Query: 136 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 315
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 316 DRCYRCNGTGHIAREC 363
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 499 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 413
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 511 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 368
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +1
Query: 286 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 456
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 457 QTCYNCNKSGHISRNCPDGTKTCYVCGK 540
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 394 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 394 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 394 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 501
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 549
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 549
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 237
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 399 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 563
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +1
Query: 322 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 432
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 316 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 486
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 487 HISRNC 504
IS C
Sbjct: 275 EISTPC 280
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 429
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 430 PEGGRESATQTCYNCNKSGHISRNC 504
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 388 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 549
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 331 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 432
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +1
Query: 238 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 402
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 403 KTGHIARNCPEGGRESATQT 462
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,819
Number of Sequences: 28952
Number of extensions: 300904
Number of successful extensions: 1637
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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