Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e14
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   6.5  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    24   8.6  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    24   8.6  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   8.6  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 160 FLESSFFLC--TFAVQYSCMC 216
           F   SFFL   TFAV  SC+C
Sbjct: 103 FSPKSFFLVYLTFAVSVSCLC 123


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 362 YIVCYLLSIYL 394
           YIVCY L+IYL
Sbjct: 58  YIVCYTLAIYL 68


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  SHYMSIWLIGLRKFIIKDGLKNTEY 104
           +H+  + +   RK++ KDG+  TEY
Sbjct: 227 THFGELAIALFRKYLAKDGIVITEY 251


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 339 IPGNCNFKPSPSTLQKSKYYI 277
           IP +    P P+ LQK+ YY+
Sbjct: 179 IPSSPKCAPDPTQLQKAAYYL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,796
Number of Sequences: 5004
Number of extensions: 40270
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)