Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e14
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    29   1.6  
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582...    27   4.8  
07_03_0870 - 22177711-22177818,22177954-22178176,22178310-221784...    27   4.8  
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422...    27   4.8  
10_08_0177 + 15468166-15468179,15468610-15468672,15470005-154701...    27   6.3  
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358...    27   6.3  
08_01_0097 + 694992-695204,696449-697111,697188-697322                 27   8.3  

>06_02_0060 -
           11026885-11026929,11027732-11027756,11027886-11027992,
           11028023-11028103,11028301-11028405,11031495-11031762,
           11031854-11032056
          Length = 277

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 LCYHGLFFGVVIFFVYICCAIFMYV 215
           L Y GLF    IFFV+I  A+F+ V
Sbjct: 93  LMYFGLFLATGIFFVFIAFALFLPV 117


>09_04_0203 -
           15556064-15556561,15557537-15557581,15557852-15558258,
           15558538-15558841,15559421-15560757,15561492-15561750
          Length = 949

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 108 RKKQSWLKIANLCYHGLFFGVVIFFVYICCAIFM 209
           R K +W+ +  L   GL+FG + FF+Y    I++
Sbjct: 572 RDKNTWVFLKPLTT-GLWFGSIAFFIYTAVVIWL 604


>07_03_0870 -
           22177711-22177818,22177954-22178176,22178310-22178470,
           22178558-22178733,22178865-22178970,22179078-22179221,
           22179300-22179455,22179855-22179959,22180067-22180126,
           22180160-22180197,22180481-22180538
          Length = 444

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 LFFGVVIFFVYICCAIFMYVF 218
           LFF +  FF  +C  ++ YVF
Sbjct: 224 LFFSITCFFELVCLLLYAYVF 244


>06_03_0718 +
           23840198-23840409,23841368-23841518,23842190-23842294,
           23843476-23843608,23844164-23844849,23844937-23845299
          Length = 549

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 138 NLCYHGLFFGVVIFFVYICCAIFMYVFR 221
           +L Y GLF    IF V+I   IF+ V R
Sbjct: 95  SLVYFGLFLASGIFLVFIAFTIFLPVMR 122


>10_08_0177 +
           15468166-15468179,15468610-15468672,15470005-15470110,
           15472001-15472094,15472328-15472395,15473112-15473294,
           15473541-15473645
          Length = 210

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 71  HH*RRPQEHRIW*EETELVE--DS*FMLSWTIFWSRHFFCVHLLCNIHVCVSI--I*ACS 238
           HH R+  EH  + E TELV+      + SWT    R FF   +   +H+ V +      S
Sbjct: 128 HHLRKNNEHWTFKEITELVKGVSKHGVGSWTKL-KRDFFSTSIRTAVHLKVKVQKTMILS 186

Query: 239 IDLFKVHHVKY 271
           +D+  V  +K+
Sbjct: 187 LDMELVEEIKH 197


>09_04_0199 -
           15533619-15534107,15534956-15535362,15535559-15535862,
           15537061-15538397,15539463-15539727
          Length = 933

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 108 RKKQSWLKIANLCYHGLFFGVVIFFVYICCAIFMYVFRSYE-HAV*TYLKCIM*NIVIYS 284
           R K +W+ +  L    L+FG + FFVY    I++   RS       ++L+ +   I IY 
Sbjct: 574 RNKNTWVFLKPLTTD-LWFGSIAFFVYTAIVIWLLERRSNNAELTGSFLRQL--GIAIYF 630

Query: 285 TYF 293
           ++F
Sbjct: 631 SFF 633


>08_01_0097 + 694992-695204,696449-697111,697188-697322
          Length = 336

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  DWSHYMSIWLIGLRKFIIKDGLKNTEYGRK 113
           D  + +S+W  GL+  I+ DG K   Y  K
Sbjct: 224 DEKNVLSLWFDGLKLLIVTDGEKGCRYFTK 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,764
Number of Sequences: 37544
Number of extensions: 216878
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)