Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e14
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               38   0.003
SB_41073| Best HMM Match : GRP (HMM E-Value=2.8)                       29   2.1  
SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)                27   8.6  
SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)           27   8.6  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    27   8.6  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 6   FDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKK 116
           FDV  IDW+ Y   + IG+++F++K+ LKN      +
Sbjct: 334 FDVRVIDWNKYFEDFTIGMKQFLLKEDLKNVHLAHNR 370


>SB_41073| Best HMM Match : GRP (HMM E-Value=2.8)
          Length = 305

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 164 WSRHFFCVHLLCNIHVCVSII*ACSIDLFKVHHVKYSNI 280
           WS  FF V+L+  +++ VSI  A     ++  H+KYS+I
Sbjct: 229 WSAWFFVVYLVLCMYIFVSIFLAVVYKNYR-KHLKYSDI 266


>SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 72  IIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFFVYIC 194
           + K  +    YG + + WL++  LC   L  G V  FVY C
Sbjct: 11  LFKGSVTGIVYGGRTRCWLRVPYLC---LSMGAVPVFVYGC 48


>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 69  FIIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFFVYICCAIFMYVFRSYE 230
           F ++DG+++  Y +  Q   ++A   ++ +F  VV    ++C  I   V   Y+
Sbjct: 166 FPLRDGIEDESYQQIFQPVSRLAGEHFNSVFHPVVSHTPFVCLKIITKVIEIYQ 219


>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 212 IHEYCTANVHKKND 171
           +HEYCT  VHK  D
Sbjct: 2   VHEYCTTTVHKHYD 15


>SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)
          Length = 687

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 362 RSGNLVPIFLVTATSNLHHLHYKKVSTIY 276
           RS  LV IFL+  T  LH  H K V+  Y
Sbjct: 183 RSIRLVGIFLLVYTKTLHMPHIKDVAAEY 211


>SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)
          Length = 256

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 221 SKHIHEYCTANVHKKNDDSKK*SMIT*ISYLQPALFLPTIFGVLEAVFNDEL 66
           S  I   C A +   N +S K S+ T ++    A+ L  +FG   A+ ND L
Sbjct: 8   SLRISAGCDATI-VSNYNSPKASLATALARTMIAIILGVLFGAFLAIINDSL 58


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 195 CAIFMYVFRSYEHAV*TYLKCIM*NIVIYSTY 290
           C   M+V+R+Y H   TY++       +Y TY
Sbjct: 895 CTEHMHVYRTYAHLYRTYVRVYRTYAHVYRTY 926


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,198
Number of Sequences: 59808
Number of extensions: 283078
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)