Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10e14
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 42 1e-04
Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A recept... 29 1.4
Z82095-3|CAB05028.1| 411|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z79755-3|CAB02108.1| 355|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine re... 27 5.6
AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical ... 27 5.6
AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical... 27 7.4
AF068710-2|AAC17770.1| 476|Caenorhabditis elegans Hypothetical ... 27 7.4
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 26 9.8
L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical pr... 26 9.8
AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical... 26 9.8
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 26 9.8
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 26 9.8
AL031627-11|CAA20962.2| 355|Caenorhabditis elegans Hypothetical... 26 9.8
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 42.3 bits (95), Expect = 1e-04
Identities = 14/36 (38%), Positives = 27/36 (75%)
Frame = +3
Query: 3 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGR 110
NFDV ++DW+ Y+ +++G++KF++K+ L+N R
Sbjct: 423 NFDVRQVDWNSYLFDYVMGIKKFLLKENLENLNRSR 458
>Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical
protein C32C4.7 protein.
Length = 536
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 133 IFNQLCFFLPYSVFLRPSLMMNFLKPINQIDI 38
+ N +C F+ Y VF++P M+++ P +ID+
Sbjct: 209 LMNTVCAFI-YQVFMKPPKMISYSHPYYEIDL 239
>AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A receptor
subunit protein.
Length = 550
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 17 EDRLVALYVDLVDRLKKVHH*RRPQEHRIW*EETELVEDS*FMLSWTIFWSRH 175
ED +V+ RL V RR + I+ ET L D MLSW FW H
Sbjct: 237 EDSIVSTATGSYQRLSLVFQLRRSVGYFIF--ETYLPCDLIVMLSWVSFWINH 287
>Z82095-3|CAB05028.1| 411|Caenorhabditis elegans Hypothetical
protein ZK849.5 protein.
Length = 411
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 360 EWQFSTNIPGNCNFKPSPSTLQKSKYY-ILLYFT*CTLNKSILHAHMIETHT 208
EWQ ++ NC++ P P ++ + + YF C + L + + HT
Sbjct: 221 EWQTKLSLLRNCDYIPIPLAYPQAVFLAVRCYFAVCVFTRQHLDRYDSKMHT 272
>Z79755-3|CAB02108.1| 355|Caenorhabditis elegans Hypothetical
protein F43G9.4 protein.
Length = 355
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -3
Query: 359 SGNLVPIFLVTATSNLHHLHYKKVSTIYYYISHDAL*ISLYCMLI*SKHIHEYC 198
S +++P L+T S +L Y+ I+Y ++ L + + + H+ E C
Sbjct: 263 SSHIIPHILITCYSACRNLDYQTSKEIFYQLNTRVLGLDSSMSIPVTDHLEELC 316
>AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine
receptor, class h protein40 protein.
Length = 352
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 302 VDGEGLKLQLPGILVLNCHSYIVCYLLSIYL--YVDN 406
+D +Q+ G + N H YI C++++ ++ Y+ N
Sbjct: 193 LDDRAFLIQIDGRTMFNPHMYITCFIVACFIIFYMSN 229
>AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical
protein C50A2.3 protein.
Length = 186
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 171 VIFFVYICCAIFMYVFRSYEHAV 239
+IF V++C + V RSYE V
Sbjct: 35 IIFIVFLCLCVVCLVVRSYERPV 57
>AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical
protein Y116A8C.23 protein.
Length = 264
Score = 26.6 bits (56), Expect = 7.4
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = -3
Query: 422 ILILIYYPRTNR*IKDNKQYRSGNLVPIFLVTATSNLHHLHYKKVSTIYYYISHDAL*IS 243
+L IY+ T + SG LVP+FL + T + +ST+ H ++
Sbjct: 71 VLSFIYFMSTLLAFLSIMSHVSGLLVPLFLFSGTGSFVLFFLVNISTM-----HTPHAVN 125
Query: 242 LYCMLI*SKHIHEYCTANVHKK 177
+Y L S YC A V K
Sbjct: 126 VYKQLCQSNITKIYCEAIVEDK 147
>AF068710-2|AAC17770.1| 476|Caenorhabditis elegans Hypothetical
protein T06A1.5 protein.
Length = 476
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 102 YGRKKQSWLKIANLCYHGLFFGVVIFFVYI 191
YG K+ WL A L H GV FF+YI
Sbjct: 220 YG-KEPKWLHFAELVEHYKLQGVNKFFIYI 248
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 136 LIYVIMDYFLESSFFLCTFAVQYSCMCFDHMSMQYRLI 249
L YVI + SFF C A +S +CF +S +YR +
Sbjct: 293 LNYVIGYGSVFISFFYCIVATSHSVICF-ALSSEYRQV 329
>L16621-8|AAA28228.1| 632|Caenorhabditis elegans Hypothetical
protein ZK688.2 protein.
Length = 632
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 296 CNVDGEGLKLQLPGILVLNCHSY-IVCYLLSIYL---YVDNK*E 415
CN D + + P ++ L H+Y +VC L Y+ + DNK E
Sbjct: 225 CNYDWVPIPIMYPQLVCLAVHTYFLVCLLARQYVVSEHADNKTE 268
>AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical
protein Y105C5B.23 protein.
Length = 338
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 138 NLCYHGLFFGVVIFFVYICCAIFMYVFRSYEHAV 239
N+CYH L ++ +++ F + R++E A+
Sbjct: 21 NICYHFLVTSLLCLVLFVNVITFFTIARNFEEAL 54
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 152 WTIFWSRHFFCVHLL 196
WT F S +FFC+ LL
Sbjct: 367 WTFFTSLYFFCISLL 381
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 152 WTIFWSRHFFCVHLL 196
WT F S +FFC+ LL
Sbjct: 367 WTFFTSLYFFCISLL 381
>AL031627-11|CAA20962.2| 355|Caenorhabditis elegans Hypothetical
protein Y102A5C.21 protein.
Length = 355
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 168 VVIFFVYICCAIFMYVF 218
V+IFFV + CA F Y++
Sbjct: 112 VIIFFVAMLCATFSYIY 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,308,300
Number of Sequences: 27780
Number of extensions: 224827
Number of successful extensions: 616
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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