Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e14
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56700.1 68416.m06307 male sterility protein, putative simila...    27   4.0  
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica...    27   7.0  

>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 6   FDVAKIDWSHY-MSIWLIGLRK 68
           FD+  IDW HY +++ L GL+K
Sbjct: 497 FDIKGIDWEHYIVNVHLPGLKK 518


>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
           to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
           thaliana)
          Length = 616

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 6   FDVAKIDWSHYM-SIWLIGLRKFIIK 80
           FDV  I+W+ Y+ ++ + GLR+ ++K
Sbjct: 588 FDVGSINWTDYITNVHIPGLRRHVLK 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,277,348
Number of Sequences: 28952
Number of extensions: 190661
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)