Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e13
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   0.40 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   0.53 
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   2.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   2.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   3.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   3.7  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    25   3.7  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   4.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   4.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   6.5  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    23   8.6  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    23   8.6  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 248 YFFTIFRIFFCLYFLPDMCFFSLESM 171
           YFF +F   F  Y+ PD+ F +L S+
Sbjct: 273 YFFIVFVASFIWYWFPDLIFPALSSL 298


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 167 GFM*ILNN*LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQCH 12
           G + +L   L+++L +  L+N  F   L + L +SV+F    F  CK    H
Sbjct: 170 GVIYVLTIALINYLISKSLKNSIFNPLLTWTLDISVVFFKEYFAYCKFSSLH 221


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 272 PYLLTIRCYFFTIFRIFFCLYFLPD 198
           P+LL +   FF +F  FF L F PD
Sbjct: 68  PFLLIV-FLFFNLFPTFFFLPFFPD 91


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 140 LLSHLQAYILQNLSFYETLFFVLILSVIFETFI 42
           LL   ++Y+++ L   +++FF+  +  +FE F+
Sbjct: 569 LLIWFESYLVEELDNSKSIFFLFKIYKVFEVFV 601


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 241 SLYLGFFFVYIFFQICAFFHWNQCPV 164
           S  L  F+   F  +C FFH  QC +
Sbjct: 335 SWVLASFYSLHFLWLCTFFHALQCAI 360


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 238 LYLGFFFVYIFFQICAFFH 182
           L+L  F  YIFF + +FF+
Sbjct: 209 LFLVIFICYIFFTVLSFFN 227


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 175 DSNEKKHISGRKYKQKK 225
           +SNEK+ +S +KYKQKK
Sbjct: 158 ESNEKR-LSEKKYKQKK 173


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 266 LLTIRCYFFTIFRI-FFCLYFL 204
           +LTIRC F  +F I +FC + L
Sbjct: 6   VLTIRCTFHVLFAICYFCDHLL 27


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 140 LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQC 15
           +LS ++ + L    +Y+  FF+LI S + E  I  + ++  C
Sbjct: 164 ILSQIREF-LSTADYYQRPFFLLIKSTLDEWTIAPLKELSHC 204


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 247 IFSLYLGFFFVYIFFQICAFFH 182
           I + +  FFF + FF  C  FH
Sbjct: 71  IEAFFYWFFFFFFFFSHCRRFH 92


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 263 LTIRCYFFTIFRIFFCLYFLPDMCF 189
           LT+  +F      FFCL F P + F
Sbjct: 274 LTVERFFQHFLARFFCLIFFPFLFF 298


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 251 CYFFTIFRIFFCLYFLPDMCFFSLESMP 168
           C+ ++I+    CL   P + + SL S P
Sbjct: 215 CFLWSIYICLLCLDLAPALFYDSLASAP 242


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 224 FFCLYFLPDMC 192
           FFCLYF   MC
Sbjct: 115 FFCLYFARGMC 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,959
Number of Sequences: 5004
Number of extensions: 24930
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)