Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e13
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0071 + 26177698-26177796,26178449-26178553,26178636-261787...    27   3.4  
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    27   4.5  
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    27   4.5  

>01_06_0071 +
           26177698-26177796,26178449-26178553,26178636-26178742,
           26179466-26179620,26180140-26180228,26180353-26180875,
           26181568-26181642,26181802-26182022,26182657-26182739,
           26182826-26182937,26183206-26183280,26183346-26183525
          Length = 607

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 16  HCFILQILNMNVSNMTLKISTKNSVS*KLRFCRIYACKCDNN 141
           H + LQ L+ N   +  KIS KNS+  K R   I A  CD N
Sbjct: 261 HVWHLQTLSQN-EVLPTKISVKNSLDKKGRIPIISAKLCDTN 301


>07_03_0919 -
           22594980-22595111,22595398-22595427,22595522-22595587,
           22596021-22596107,22596868-22596921,22597696-22597762,
           22598099-22598215,22598536-22598637,22598784-22598902,
           22598966-22599049,22599220-22599354,22599470-22599505,
           22599581-22599700,22600557-22600645,22601507-22601596,
           22601629-22601802,22602135-22602235,22602323-22602363,
           22602872-22602883
          Length = 551

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 QKKILNIVKK*QRMVNKYGF 276
           ++  L+ VKK QR VN YGF
Sbjct: 88  RRNYLHFVKKYQRQVNNYGF 107


>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 QKKILNIVKK*QRMVNKYGF 276
           ++  L+ VKK QR VN YGF
Sbjct: 88  RRNYLHFVKKYQRQVNNYGF 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,878,733
Number of Sequences: 37544
Number of extensions: 115708
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)