Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e13
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         28   2.0  
SB_29877| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)                    26   8.1  

>SB_56815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 181 WNQCPVSCKS*IINYYRTCKHIFCK 107
           W+ C VSC +   +  R C H+ CK
Sbjct: 116 WSNCSVSCGNGTQSRSRNCSHVKCK 140


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 220 FVYIFFQICAFFHWNQCPVSCKS*IINYYRTCKHIFCK 107
           FV +F+ +C F  WN  P+      +NY   C+H+ C+
Sbjct: 339 FVAVFWCLCGFLTWNLVPII----DLNY---CRHLPCQ 369


>SB_29877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 176 IPMKKSTYLEENINKKKS 229
           +PMKK  +L + INK+KS
Sbjct: 3   VPMKKEGFLAKKINKQKS 20


>SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)
          Length = 158

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 193 AFFHWNQCPVSCKS*IINYYRTC 125
           AFF W  CP S     +N  +TC
Sbjct: 135 AFFKWEVCPYSLDICRLNIMKTC 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,120
Number of Sequences: 59808
Number of extensions: 156430
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)