Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e13
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 260 TIRCYFFTIFRIFFCLYFLPDMCFFSLE 177
           TI C  +  F +  C   + ++C  S++
Sbjct: 111 TIMCDLWVSFDVLSCTASILNLCMISVD 138


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 55  NMTLKISTKNSVS*KLRFCRIYACKCD 135
           N  +++S   SV+  +RF    AC  D
Sbjct: 138 NKLVRLSGDGSVTYGMRFTTTLACMMD 164


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 IYACKCDNN*LFKIYMK 165
           +Y CK  NN    +YM+
Sbjct: 220 VYQCKYGNNCEIDMYMR 236


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 189 KAHIWKKI*TKKN 227
           K H+WKK   KK+
Sbjct: 423 KTHVWKKGRDKKS 435


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 IYACKCDNN*LFKIYMK 165
           +Y CK  NN    +YM+
Sbjct: 17  VYQCKYGNNCEIDMYMR 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,588
Number of Sequences: 438
Number of extensions: 1811
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)