Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e13
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    28   1.6  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    28   1.6  
At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    26   5.0  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    26   6.7  
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    25   8.8  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    25   8.8  
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim...    23   9.5  

>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 226 FFFVYIFFQICAFF 185
           +F+VY+F Q CAFF
Sbjct: 457 YFYVYLFLQSCAFF 470


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 226 FFFVYIFFQICAFF 185
           +F+VY+F Q CAFF
Sbjct: 529 YFYVYLFLQSCAFF 542


>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -2

Query: 274 IHTY*PFVVIFSLYLGFFFVYIFFQICAFFHWNQCPVSC 158
           ++ +  ++++F ++L  FF Y   +  +FF   Q  + C
Sbjct: 22  VYAFLEWLLMFFIFLNSFFTYFIVKFASFFGLKQVCLLC 60


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 128  LQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQCH-CL 6
            +Q  +LQ+L  + T  F+ ++S +    +    K   CH CL
Sbjct: 1223 MQRAVLQSLGSFSTSLFIYLISCLTVNILRYFAKCPFCHYCL 1264


>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 200 DMCFFSLESMPGFM*ILNN----*LLSHLQAYILQNLSFYETLFFVLILSVIFETFI 42
           D+ FFS ++ PG++ +L       ++ H+    ++    Y  LF  LI+ + F  FI
Sbjct: 450 DVSFFSFKNFPGYVFLLRTHFFISVVLHVLYLTIKPPQKYPFLFEALIMILCFSYFI 506


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 232 LGFFFVYIFFQICAFFHW 179
           LGF+  +IFF +C F ++
Sbjct: 4   LGFYVTFIFFLVCLFTYF 21


>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 618

 Score = 23.0 bits (47), Expect(2) = 9.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 YACKCDNN*LFKIYMK 165
           Y CKC NN    IYMK
Sbjct: 536 YECKCSNN---SIYMK 548



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 109 CRIYACKCDNN 141
           C+   CKC NN
Sbjct: 522 CKCDGCKCKNN 532


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,225,994
Number of Sequences: 28952
Number of extensions: 112819
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)