Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10e11
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 32 0.51
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 32 0.51
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 31 1.2
03_01_0298 + 2318836-2319051,2321238-2323106 29 3.6
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 29 4.7
06_03_0757 + 24267599-24268882 28 6.2
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 28 6.2
04_04_0463 - 25397837-25399693,25402136-25402405 28 8.3
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 488 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 667
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 668 LSTLEMTQ 691
TL++ Q
Sbjct: 290 AETLDVKQ 297
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 488 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 667
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 668 LSTLEMTQ 691
TL++ Q
Sbjct: 290 AETLDVKQ 297
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 389 YTSKRDRFYESFKRY-HAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQ 565
Y S++ R Y Y YE +N +++++ K ++ T+ + + S K +
Sbjct: 2165 YKSRQCRTYFHLAHYTDGLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSE 2224
Query: 566 KT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 670
KT Y + +L+ +L+ E KI+ +K+ A +
Sbjct: 2225 KTDYSVKIQELQKQLALDEEEAGKIQCTHAKFSAKI 2260
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
A H F HF C SSN NYVC + + WK+L
Sbjct: 92 AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 117 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSF 4
+KS +SD+LS S +K+ G + + TC TKK+ SF
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF 309
>06_03_0757 + 24267599-24268882
Length = 427
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 639 NWRSANTWLCSAPWK*PSRCW 701
+WR A W+C PW + W
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAW 368
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 116 LNREGISTQTNFRNHLLLKDMQ 51
+NREGIS N N LLLK +Q
Sbjct: 77 INREGISYYNNLINELLLKGVQ 98
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 248 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 346
A H+F HF C SSN NY C I + WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,431
Number of Sequences: 37544
Number of extensions: 248239
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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