Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e10
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             192   2e-49
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)             28   3.6  
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   4.8  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   4.8  
SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   6.4  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               27   8.4  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  192 bits (467), Expect = 2e-49
 Identities = 90/134 (67%), Positives = 106/134 (79%), Gaps = 2/134 (1%)
 Frame = +1

Query: 40  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK 
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 220 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRFEE 393
           +  KRSK+KPFVKV NYNHLMPTRY+VD   +K    KD+ +DPA +KK     +   EE
Sbjct: 61  RTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEE 120

Query: 394 RYKSGKNKWFFQKL 435
           RYKSGKNKWFFQKL
Sbjct: 121 RYKSGKNKWFFQKL 134


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 325 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 441
           +KDL  + P   +K  FN  +  E R++ G  K F+++LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
          Length = 289

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 117 QELRRRYLRQAIRACLRRWYRQVPPESAQEDGKE*NPQEVQDKAFRQGCKL*SLDANTLY 296
           +E  R+ L  A R   R  Y +  PE     GK   P+ +    +R GCK  +   N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228

Query: 297 S 299
           +
Sbjct: 229 A 229


>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 127 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 273
           D+   D  Y   + AG+ +  +  HK+ G  K   +   KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 175  IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMP-TRYTVDFSFEKFSAKDLKDPAK 351
            I  Y  KVH    K + + ++K+ PF K    N ++P  +  V  +FEK++A    + +K
Sbjct: 1083 IKMYMEKVHYYKAKVETYYKTKVMPFYK----NKVVPFYKNKVIPAFEKYTAL-ADELSK 1137

Query: 352  RKKLRFNTRVRFEERYK 402
               LR  T +     YK
Sbjct: 1138 NMTLRAKTYILNSRPYK 1154


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 313 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 438
           ++ S  D +D +KRK++RF     FE   + YK+      FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281


>SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 126 RRRYLRQAI---RACLRRWYRQVPPESAQEDG---KE*NPQEVQDKAFRQGCK 266
           +RR L   I   +AC+ +WY++V P +A + G   K  N + ++ K F+   K
Sbjct: 6   KRRTLENIIENFKACVLKWYQEVDPTNAIKRGQIAKTFNDEIIRFKRFQAAYK 58


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 182 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLRTSTTLPGFIILPILEGY 27
           +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L     Y
Sbjct: 13  VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 25  EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 129
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +1

Query: 154 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 333
           GH F++ ID++ RK HK    +KI  R+ IK     ++Y+ +  T+  +D   ++  A  
Sbjct: 99  GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150

Query: 334 L 336
           +
Sbjct: 151 I 151


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 322 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 438
           SAK+L++  +RK+  +NT    E RY+  K K   Q  R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,521
Number of Sequences: 59808
Number of extensions: 303565
Number of successful extensions: 843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)