BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10e09 (703 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi... 283 1e-76 At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) 280 6e-76 At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 30 1.3 At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 30 1.7 At5g45490.1 68418.m05588 disease resistance protein-related cont... 29 3.0 At3g09000.1 68416.m01053 proline-rich family protein 28 6.9 At2g21630.1 68415.m02573 transport protein, putative similar to ... 27 9.1 >At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar to 40S ribosomal protein S3A (S phase specific protein GBIS289) GB:P49396 [Brassica rapa] Length = 262 Score = 283 bits (693), Expect = 1e-76 Identities = 132/205 (64%), Positives = 168/205 (81%) Frame = +2 Query: 89 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268 VDPF++KDWYDV+APS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D Sbjct: 21 VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78 Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448 ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+F Sbjct: 79 NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLF 138 Query: 449 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 628 CI FT + + ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IE Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIE 198 Query: 629 KACHGIYPLRDVCIRKVKVLKXPRF 703 KA GIYPL++V IRKVK+LK P+F Sbjct: 199 KATQGIYPLQNVFIRKVKILKAPKF 223 >At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) Length = 262 Score = 280 bits (687), Expect = 6e-76 Identities = 132/205 (64%), Positives = 166/205 (80%) Frame = +2 Query: 89 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 268 VDPF++KDWYDV+AP F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D Sbjct: 21 VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78 Query: 269 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 448 ++RK RL AE VQGRNVL F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+F Sbjct: 79 NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMF 138 Query: 449 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 628 CI FT + + ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IE Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIE 198 Query: 629 KACHGIYPLRDVCIRKVKVLKXPRF 703 KA GIYPL++V IRKVK+LK P+F Sbjct: 199 KATQGIYPLQNVFIRKVKILKAPKF 223 >At3g52640.1 68416.m05799 nicastrin-related contains weak similarity to Nicastrin precursor (Swiss-Prot:Q92542) [Homo sapiens] Length = 676 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = -1 Query: 550 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 386 N F H L D S+++ V A +A+ + I ++ +DT N ++G +H+N F E L Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487 >At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein Length = 1037 Score = 29.9 bits (64), Expect = 1.7 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -1 Query: 664 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 497 +IAQRV +AG+ + N + V LP F + C+D H ++D + S + + Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEINL 480 >At5g45490.1 68418.m05588 disease resistance protein-related contains Pfam domain, PF00931: NB-ARC domain, a novel signalling motif found in plant resistance gene products Length = 354 Score = 29.1 bits (62), Expect = 3.0 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Frame = +2 Query: 101 TRKDWYDVR--APSMFSKRQVGTTLVNRTQG-TKIASEGLKGRVFEV-SLADLQADTDAE 268 T KDW DV A K++ R + +K+ + G E+ SL D Sbjct: 22 TCKDWLDVNGLAKGNLEKKRDDNEEEERLKTESKLPGHDIHGFDNEIKSLQHFLLDQKVR 81 Query: 269 RSFRKFRLIAEYVQGRNVLC 328 R F+ ++ EY G+ LC Sbjct: 82 REFKSLVIVGEYGVGKTALC 101 >At3g09000.1 68416.m01053 proline-rich family protein Length = 541 Score = 27.9 bits (59), Expect = 6.9 Identities = 28/109 (25%), Positives = 55/109 (50%) Frame = +3 Query: 324 SATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANARRATP 503 S++S A +P SSG + R +S+P R+ +++ P+ T +N+R +TP Sbjct: 137 SSSSVAGLRRPSSSG----SSRSTSRPATPTRRSTTP---TTSTSRPVTTRASNSRSSTP 189 Query: 504 STLRSEQSERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTSRRPAMAST 650 ++ + + R + + T +SG ++ TP R++ RP+ AS+ Sbjct: 190 TSRATLTAARATTSTAAPRTTTTSSG---SARSATP-TRSNPRPSSASS 234 >At2g21630.1 68415.m02573 transport protein, putative similar to Swiss-Prot:Q15436 protein transport protein Sec23A [Homo sapiens] Length = 761 Score = 27.5 bits (58), Expect = 9.1 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -2 Query: 387 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 235 CHF T+H L + + PW + + RP + + L + L + +AR Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,627,565 Number of Sequences: 28952 Number of extensions: 336345 Number of successful extensions: 1004 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1002 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1506636208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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