Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10e08
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 65 3e-11
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 63 2e-10
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 62 2e-10
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 56 2e-08
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 29 3.6
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 29 3.6
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 29 3.6
At1g27620.1 68414.m03373 transferase family protein similar to h... 28 4.8
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 28 6.3
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 8.4
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 8.4
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 8.4
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 201 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 380
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 381 GEKG-FEAAGVTGPGGEPVK 437
G G +A VT PGG +K
Sbjct: 64 GSDGKTKAVNVTAPGGGSLK 83
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 204 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 383
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68
Query: 384 EKGF-EAAGVTGPGGEPVKGS 443
G +A V+GP G PV+G+
Sbjct: 69 NSGRPKAIEVSGPDGAPVQGN 89
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 204 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VA 380
E+ G+VKWF+ + G+GFI +D +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEID 64
Query: 381 GEKGFEAAGVTGPGGEPVKGS 443
+A V+GP G PV+G+
Sbjct: 65 NNNRPKAIDVSGPDGAPVQGN 85
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 201 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 380
A + G V WF+ GYGFI +D E++FVHQ++I + RS+ GE+VE+ +
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63
Query: 381 GEKG-FEAAGVTGPGG 425
G G +A VT PGG
Sbjct: 64 GSDGKTKAIEVTAPGG 79
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 339 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 485
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 339 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 485
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 339 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 485
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At1g27620.1 68414.m03373 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 442
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = -3
Query: 630 KNCAEMVQCXXXXXXXXXXXLGWAGVHDVLILLCVELLH------RLVRHLDEGNIGGGS 469
K CA ++C WA D+ + + V+LL RL L +G G G
Sbjct: 248 KTCAPSLKCTTFEALAANTWRSWAQSLDLPMTMLVKLLFSVNMRKRLTPELPQGYYGNGF 307
Query: 468 HGACLQHKVSLLL 430
AC + KV L+
Sbjct: 308 VLACAESKVQDLV 320
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 647 AKIATEKTALRWYNASFLTLISLCTPLV 564
AK TE+ AL W +F +++LC ++
Sbjct: 158 AKTLTEREALEWSKRNFADVVTLCPSVI 185
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 307 SPVTTHVRLCARSATERRWSLPWL 378
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 89 GERRWWQRW*NTPRPLLDV 33
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 89 GERRWWQRW*NTPRPLLDV 33
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,376
Number of Sequences: 28952
Number of extensions: 181085
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -