Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e05
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.7  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.7  
At5g12230.1 68418.m01435 expressed protein                             29   2.2  
At2g32910.1 68415.m04035 expressed protein                             29   2.9  
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    29   3.9  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   5.1  
At1g06750.1 68414.m00717 hypothetical protein                          28   5.1  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   6.8  
At1g02790.1 68414.m00235 exopolygalacturonase / galacturan 1,4-a...    28   6.8  
At4g14180.1 68417.m02189 expressed protein ; expression supporte...    27   8.9  
At3g29265.1 68416.m03673 hypothetical protein                          27   8.9  

>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 333 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 455
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 333 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 455
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At5g12230.1 68418.m01435 expressed protein 
          Length = 221

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 458 QSKIYRRFHKRHATRYTQRLRNYKKHSRHHK 550
           +SK   R HK+H  R   + R +KKH   HK
Sbjct: 121 ESKDRDRKHKKHKDRDKDKDREHKKHKHKHK 151


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 DAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDD 272
           D+Y  D ++IC  H ++R   + MV P   +DD
Sbjct: 610 DSYRRDPYYICERHALERPPRTYMVSPGRQDDD 642


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 3   RDFFLNHKIAVVHIYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 182
           RD F  HK    H++ G N +  PV   P  +       AS V+  A  T  +  S  A+
Sbjct: 162 RDVFAGHKYCERHMHRGRNRSRKPV-ETPTTVNATATSMASSVAAAATTTTATTTSTFAF 220

Query: 183 HDDG 194
              G
Sbjct: 221 GGGG 224


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 518 RNYKKHSRHHKPEHVLFACVARR 586
           +++K+H RHHK + +   CV +R
Sbjct: 340 KSHKRHGRHHKSDCMCAICVLKR 362


>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 452 MRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPN 619
           M  + ++ R  +   T+   RL++  KH  H K E      VAR++ F  R + PN
Sbjct: 1   MIAAAVHYRLRRLRDTKIIPRLKSSHKHKGHEKLER-FSHYVARQMGFKDRRECPN 55


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 HLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGN-KERGI 329
           H I+R +  K VLP + EDD   K+T A    GN K+ GI
Sbjct: 53  HDIERIESGKYVLPKYPEDD-YVKLTEAGESKGNGKKTGI 91


>At1g02790.1 68414.m00235 exopolygalacturonase / galacturan
           1,4-alpha-galacturonidase (PGA3) / pectinase identical
           to SP|P49062 Exopolygalacturonase clone GBGE184
           precursor (EC 3.2.1.67) (ExoPG) (Galacturan
           1,4-alpha-galacturonidase) {Arabidopsis thaliana}
          Length = 422

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 339 LIPSATNYQEVFN--LNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEGFTSGTQRVIHS 512
           L P++  ++ + N  +N +       FH+     E VN+   N+K T    S     IH 
Sbjct: 167 LPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNI--QNIKLTAPAESPNTDGIHL 224

Query: 513 VYATTRSILDTT 548
             A   SILD+T
Sbjct: 225 SNADNVSILDST 236


>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +3

Query: 366 EVFNLNSMMQAEQLIFHLIYNNE---EAVNVICDNLKYTEGFTSGTQRVIHSVYATTRSI 536
           E + ++  ++AE++IFHL+   E    ++N+  ++LK+     S ++ +I+ +   +R+ 
Sbjct: 666 ERYQISYSLEAERIIFHLLNEYEWDLGSINIHLESLKWLFQQESISKSLIYQIQKISRNN 725

Query: 537 L 539
           L
Sbjct: 726 L 726


>At3g29265.1 68416.m03673 hypothetical protein
          Length = 236

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 464 KIYRRFHKRHATRYTQ-RLRNYKKHS 538
           K Y  FHK H T   Q RLR Y K S
Sbjct: 81  KTYTTFHKNHITLQQQYRLRGYTKFS 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,129
Number of Sequences: 28952
Number of extensions: 300718
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)