Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10e04
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    29   4.1  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    29   4.1  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    29   4.1  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    29   4.1  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   9.4  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   9.4  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   9.4  
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc...    27   9.4  
At2g22520.1 68415.m02671 hypothetical protein  and grail               27   9.4  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At1g17950.1 68414.m02221 myb family transcription factor (MYB52)...    27   9.4  

>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 204 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 362
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 180 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 228


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 204 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 362
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 204 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 362
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 282 TTEAHEVVYEMK-LFQAMYFSNVLLNYVVFSDNQMGTNFVFVNNLI 416
           TTE   + +E + L Q  Y    L +YVVFSDN + ++ V VN+ I
Sbjct: 297 TTEYFTLDHEKRQLLQQSYNDPDLYHYVVFSDNVLASS-VVVNSTI 341


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 628 KAHINELNIKLLSTSFVFKHSKPIT 554
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 628 KAHINELNIKLLSTSFVFKHSKPIT 554
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 628 KAHINELNIKLLSTSFVFKHSKPIT 554
           +AH++EL    +S  FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201


>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to SP|P87051
           Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
           (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
           Pfam profiles PF00160: peptidyl-prolyl cis-trans
           isomerase cyclophilin-type, PF00400: WD domain G-beta
           repeat
          Length = 631

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 390 LYPFDCPKTPHNSTARY*STWLGTASFRKLLHGLL 286
           LYP +CPKT  N T    + +     F +++ G +
Sbjct: 491 LYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFM 525


>At2g22520.1 68415.m02671 hypothetical protein  and grail
          Length = 185

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 667 YFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLITET 530
           YFF  ++V  +  K H+  L        F FK SKP  I   + ET
Sbjct: 29  YFFSRNSVLHVHQKVHLFVLKRFCYPQKFPFKPSKPSQIKADVQET 74


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 306 YEMKLFQAMYFSNVLLNYVV 365
           YE++   A YF NVLLNY+V
Sbjct: 656 YELEEGAARYFVNVLLNYLV 675


>At1g17950.1 68414.m02221 myb family transcription factor (MYB52)
           similar to myb-like protein GI:6979341 from [Oryza
           sativa]
          Length = 249

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  MGLFTCCTKYTRLSTDTKVKFPYAALSYIN 140
           +G +  C K  RL+T T + FPY   S+IN
Sbjct: 129 IGNYKDCDKERRLATTTAINFPY-QFSHIN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,522
Number of Sequences: 28952
Number of extensions: 284410
Number of successful extensions: 586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)