Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d23
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    36   0.76 
UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1; ...    35   2.3  
UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    33   7.1  
UniRef50_A4RNK7 Cluster: Predicted protein; n=2; Magnaporthe gri...    33   9.4  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -2

Query: 652  FVTPSIC*PALLHTPADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQECDSVLRL 473
            F TP+   P     P  L  A P YSG H SPP     + G  ++      Q  DS+ +L
Sbjct: 850  FFTPTRSTP---EEPMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKL 905

Query: 472  DGTGKVVINLT 440
            DG+    + L+
Sbjct: 906  DGSSSPPLELS 916


>UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG00211.1 - Gibberella zeae PH-1
          Length = 285

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
 Frame = +2

Query: 140 GQFCVIYFFLLTTSLLV--DNIRSGIKPRAFEI*RDVDLENTSVIILIDAVMTARILDLG 313
           G+ C +     TT L V  D I   I+     +  +  L N   II+I  ++   IL L 
Sbjct: 110 GEDCSLISVRKTTRLFVIGDFITFNIQGNGGGLLANEKLANAGKIIVIVGLIAQIILFLA 169

Query: 314 --VCCN-YHRRDRAVCRKNNTPTPQDVSWHSSVEPLFRT 421
             VCC  +HRR R   R+++TP   ++ W + +  L+ T
Sbjct: 170 FVVCCVVFHRRFRVHLRQSHTPV--EIRWEAYLNMLYMT 206


>UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 355

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 465 VPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGTASCKSAGVCSSAGQQMDG 644
           +P  R+  +   T  HA++ LPP   VSV+   +CA         + +G CS  G +MDG
Sbjct: 249 LPPGRHRATLKATLEHANITLPP---VSVDFELSCAARVANAGMSQMSG-CSDGGTEMDG 304


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 534 LEAKISARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGV 364
           ++  ++ RG+R K     C      K WSL     +Y++V NN ST++    S  +GV
Sbjct: 387 IDVAVTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGV 444


>UniRef50_A4RNK7 Cluster: Predicted protein; n=2; Magnaporthe
           grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
           blast fungus) (Pyricularia grisea)
          Length = 371

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKNNTPTPQDVSWHSSVEPLFRT 421
           CN ++RD  VCR N  P   ++ W   + P F +
Sbjct: 140 CNTNQRDPKVCRANLVPLLPEIMWQYPMNPAFES 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,824,579
Number of Sequences: 1657284
Number of extensions: 14144766
Number of successful extensions: 35778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35761
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)