Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d23
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   3.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.2  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSAGQQMDGVT 650
            +       K+  +C+++   M+ +T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKNNTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -2

Query: 352 THSTIATMIIATNS*IKNSSGHDSVDENDHACIF*IDVPSYFKSTWFYPTS 200
           +HS+ +++ I  +S + N++ H SV ++  +  F + VPS   ST  Y TS
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPS---STQSYSTS 520


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 468 PSNRNTLSHSCTERHAHLFLPP 533
           P++    SH C   H+HL  PP
Sbjct: 617 PASVKLTSHKCNHLHSHLDKPP 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,892
Number of Sequences: 5004
Number of extensions: 58782
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)