Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d23
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.41 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  29   3.8  
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      29   5.0  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHL 521
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 622  LLHTPADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQECDSVLRLDGT 464
            L  TP    D +PGY  +  S   TE   A  K K A++ V +   V RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 315  TPKSRIRAVMTASMRMITLVFSRSTSRHISKARGFIPLLILST 187
            T  SR+ AVM   +  ++L  ++  S+H S A  F  LL+L T
Sbjct: 901  TTGSRLSAVMCRMIAGLSLFTTQGMSQHSSTATTFTRLLVLDT 943


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 529 LQQQRFPSKGVTHVHLSTLEQRHANRRVCVAVLVSRW 639
           ++ Q+   KG+TH +LS LE+    +R  +AV   RW
Sbjct: 106 MRLQKTAYKGLTHANLSKLEE--VGQRAGLAVTAERW 140


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 624 HCYTHPPICMTLFQGTQVHMRHPLRRKPLLLEA 526
           HC  HP I +TL   T  H  HP     LLL +
Sbjct: 654 HC-EHPAIAITLLLRTPCHCEHPAIANILLLRS 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,816,258
Number of Sequences: 59808
Number of extensions: 481239
Number of successful extensions: 1355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)