Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d20
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    27   3.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   4.8  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   8.5  

>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 157 VSPHIGSRSFVPYIRFNSCLPDSNP 83
           V+P+  +  F PY  FNS +P  NP
Sbjct: 44  VNPNYYNMGFNPYSGFNSFIPSFNP 68


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 190 NFVCQYFFE--SILLPNPGNPRPRASAKTIKTIPRCAFASFLCVAFVCAVLVKTCLGL 357
           N + Q +F   S  L N G PRP+ S+  + T+   +         +CA++ KT  G+
Sbjct: 191 NLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGGI 248


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 162 RRCHPT--SVRGRLFRTFVSIHVYP-IPIPAELPGLDFALIKNE 40
           R  HP   S++ R++   ++I++   +P+P  LPG  +A +K++
Sbjct: 343 RGSHPKTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHD 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,954
Number of Sequences: 5004
Number of extensions: 56536
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)