Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d20
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         33   0.24 
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    29   2.9  
08_02_1494 + 27523016-27524040,27524971-27525118                       28   6.7  
10_08_0268 - 16347683-16349089                                         28   8.8  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     28   8.8  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 365 NYTSPKHVLTRT--AHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGN 225
           NY   K   ++    H NA  ++ + A+RG      A A GRGL GFG+
Sbjct: 110 NYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGD 158


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 288 ARDRFYSFSAGSRSGVARIR*QYRFKEILTNKICS*--SICSLFRRCHPTSVRGRLFRTF 115
           +R R YS   GSR    R R  YR++     + CS   S+   +RRC+  S RGR +   
Sbjct: 207 SRRRSYSSYRGSRY---RSRSPYRYRR---ERSCSYDHSVSPYYRRCYSPSARGRSYSRS 260

Query: 114 VS 109
           VS
Sbjct: 261 VS 262


>08_02_1494 + 27523016-27524040,27524971-27525118
          Length = 390

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 147 TSVRGRLFRTFVSIHVYPIPIPAELPGLDF 58
           T  R R   TFVS  ++P P PA+L  LDF
Sbjct: 68  TVARNRYHATFVS-SMHPSPPPADLVSLDF 96


>10_08_0268 - 16347683-16349089
          Length = 468

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 309 QKRGKGAARDRFYSFSAGSRSGVARIR*QYRFKEILTNKICS*SICSLFRRCHPTSVRG 133
           Q+R + AAR   +SF+ G R G   IR      +I+     S S C+LF  CH  +  G
Sbjct: 273 QRRVRAAARPWLFSFAGGPRKGNGTIR-----ADIIRQCGAS-SRCNLF-HCHGAAASG 324


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 603 DLGVCCNYHRRDRVVCRKSKTP 668
           DL  C +YHRR +V    SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,296
Number of Sequences: 37544
Number of extensions: 342420
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)