Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d20
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   4.5  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
            family protein 4 protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 459  LFLLTTSLLVDNIRIGIKPRAFEK*RDVDVENTGAIILIDAVMTARILDLGVCCNYHRRD 638
            +FL+T SLL  +I +G+         D+D  + G I++  A+  A    + +C  YHR +
Sbjct: 811  VFLMTFSLL--SISMGVCGGLALLGSDLDSVSMGCIVM--AIGLAVDYSVHICYRYHRSE 866

Query: 639  RVVCRKSKTPTPQDVSW 689
                ++    T   V W
Sbjct: 867  YKTAQEKVADTLASVGW 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,249
Number of Sequences: 27780
Number of extensions: 320903
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)