Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d18
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 29 0.67
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 29 0.88
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 26 4.7
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 6.2
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 6.2
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 8.2
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 8.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.2
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 332 TPRFLNIAEFVTSFLYCLTDMSELTS 255
T RFLN+ +F + CLT+++ LTS
Sbjct: 239 TNRFLNVPDFRNVTIECLTEIASLTS 264
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 28.7 bits (61), Expect = 0.88
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +1
Query: 178 EKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVTN---SAMFRKRGVVSD-T 345
E+ HN T + K FAY+++ + + V++YK +V N MF++ G+ SD +
Sbjct: 359 EQLHNSTDLLKKAFAYTSEVF---------EKIVEEYKNIVQNDFYDLMFKRVGLPSDSS 409
Query: 346 DTVTAANYLGLIEMFKDQFDN 408
+ + + L ++E ++ N
Sbjct: 410 NKILITDLLQILEDYELDMPN 430
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 234 FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 127
+G++ G +N +GKG +H YM++ +W
Sbjct: 89 YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 3 HNQITSTVIRVEAKNDYSLLACTAVYAYCC 92
HN + + +E + DY ++ V AYCC
Sbjct: 114 HNSLQKIIKTLEKELDYRPVSVQLVDAYCC 143
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 367 YLGLIEMFKDQFDNINVRNLIANNQTF 447
YL + E+ K + +++ +RN +A QTF
Sbjct: 70 YLYISEILKSKAESLRIRNSLATLQTF 96
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 719 PNCCLSNALDMLAKILNSL-YKRISVIK 639
P+ C NA+D+L K+L + KRIS I+
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIE 302
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 164 LKPLPKNVTTLRSSSP 211
+ P+P NV TLRSS P
Sbjct: 383 IPPIPSNVETLRSSLP 398
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 24 VIRVEAKNDYSLLACTAV-YAYCCKCGQYIGRVSYASLQP 140
VI +E K + V + +CC+C YIG +S +P
Sbjct: 50 VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEP 89
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 88 AVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNS 267
+V + NI ++ P P+ SH+ + + T V P +T T T VNS
Sbjct: 60 SVTSTNITSIVPPPSTSHNSTTTTVPPTTS--MNTTTTVPPTTSLNTTTTTAPPTTHVNS 117
Query: 268 DMSV 279
+V
Sbjct: 118 TTTV 121
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 223 YSTKTYCGNITEVNSDMSVKQYK--KLVTNSAMFRKRGVVSDTDTVTAANYLGLIEMF 390
++ + G++ S S QY+ +L+T+S+ +R +V +T+ AA G+I +F
Sbjct: 653 FTDLVFYGHVDGKISIFSKTQYRFLELITSSSFYRICSLVGVGNTLWAAYTTGMIYVF 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,012
Number of Sequences: 5004
Number of extensions: 64236
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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