Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d18
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19900.1 68417.m02916 glycosyl transferase-related contains P... 33 0.19
At3g06435.1 68416.m00743 Expressed protein 30 1.3
At1g11430.1 68414.m01313 plastid developmental protein DAG, puta... 30 1.3
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p... 29 3.1
At4g09500.2 68417.m01562 glycosyltransferase family protein cont... 28 5.4
At4g09500.1 68417.m01561 glycosyltransferase family protein cont... 28 5.4
At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase / ... 28 5.4
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 28 7.2
At2g22930.1 68415.m02723 glycosyltransferase family protein cont... 28 7.2
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 7.2
At3g62550.1 68416.m07027 universal stress protein (USP) family p... 27 9.5
At3g29630.1 68416.m03726 glycosyltransferase family protein cont... 27 9.5
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 27 9.5
At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containi... 27 9.5
At1g30710.1 68414.m03754 FAD-binding domain-containing protein s... 27 9.5
>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
profiles PF01535: PPR repeat, PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif; several hypothetical proteins - Arabidopsis
thaliana
Length = 1302
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 370 LGLIEMFKDQFDNINVRNLIANNQTFDLVVVEAFAD 477
LGLIE ++ FD ++VR ++ ++ ++ L+V+ F D
Sbjct: 796 LGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 831
>At3g06435.1 68416.m00743 Expressed protein
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 7 TKLP--VQLFGLKQKMTILCW--LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYI 165
TK+P V++FG+ +T W +A L AV AVN L + +Y V +Y+
Sbjct: 15 TKIPQRVEVFGVNDPVTRFGWTIMAFLCVFGAVGAVNALEIQMDVSYLVMFVVAIYV 71
>At1g11430.1 68414.m01313 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 232
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 106 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
I+ FP PA S + Y+ LA ++ K ++A+ST TY G ++ + S K
Sbjct: 92 IVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEK 151
>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
protein similar to fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|13377776|gb|AAK20857
Length = 280
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 31 GLKQKMTILCWLALLSTLTAVNAVNILAV---FPTPAYSHHIVYKVYIEALAEKCHNVTV 201
GLK ++LC LL+ + V+AVNI V +P + ++ K + + K +TV
Sbjct: 2 GLKVSSSLLCLTILLAVSSIVSAVNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITV 61
Query: 202 V 204
+
Sbjct: 62 L 62
>At4g09500.2 68417.m01562 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 442
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
+FP A+ H I + LAEK H VT + PK
Sbjct: 9 MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41
>At4g09500.1 68417.m01561 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 417
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
+FP A+ H I + LAEK H VT + PK
Sbjct: 9 MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41
>At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase /
DEDOL-PP synthase (DPS) identical to dehydrodolichyl
diphosphate synthase [Arabidopsis thaliana] GI:7960765
Length = 303
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 124 TPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVT 303
T + H K I+ +AE C + V FA+ST+ + + E+++ MS+ Q+ + +
Sbjct: 91 TTSQGHEAGAKRLID-IAELCFELGVHTVSAFAFSTENWGRDKIEIDNLMSLIQHYRNKS 149
Query: 304 NSAMFRKRGV 333
N F + V
Sbjct: 150 NIKFFHRSEV 159
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 622 RNCCAKC*DGERGAAPRR 569
RNC C DG G APRR
Sbjct: 674 RNCWVSCGDGSLGEAPRR 691
>At2g22930.1 68415.m02723 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 442
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
+FP A+ H I + LAEK H +T + PK
Sbjct: 9 MFPWFAFGHMIPFLHLANKLAEKGHQITFLLPK 41
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 170 PLPKNVTTLRSSSPNCLRI-RPKLIA 244
PLPK VTTL+ SS LR PK+++
Sbjct: 393 PLPKIVTTLQKSSEGLLRYDTPKIVS 418
>At3g62550.1 68416.m07027 universal stress protein (USP) family
protein similar to ER6 protein [Lycopersicon esculentum]
GI:5669654; contains Pfam profile PF00582: universal
stress protein family
Length = 162
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 202 VKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDT 351
VKP L YS+ G I + ++K+Y+ + S M R R V D ++
Sbjct: 44 VKPPLPVYSSLDAAGFIVTGDPVAALKKYEYELVESVMARSRTVYQDYES 93
>At3g29630.1 68416.m03726 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 448
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
++P + H I Y LAEK H VT + PK
Sbjct: 9 LYPWFGFGHMIPYLHLANKLAEKGHRVTFLAPK 41
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 559 QSFPPNRSQARFGLRAQDRTGGQTPTHNRQTLPRQLNQTS 440
QS PPN+S G Q +T Q+P+ R P Q S
Sbjct: 733 QSQPPNQSIGNGGDDFQTQTQSQSPSQTRAQSPSQAQAQS 772
>At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 715
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/80 (22%), Positives = 30/80 (37%)
Frame = +1
Query: 247 NITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNL 426
N V++D+ ++ + + T V A G IEM + FD I +N+
Sbjct: 434 NACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNI 493
Query: 427 IANNQTFDLVVVEAFADYAL 486
I+ + D AL
Sbjct: 494 ISWTVIISAYAINGLPDKAL 513
>At1g30710.1 68414.m03754 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 531
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 707 LSNALDMLAKILNSLYKRISVIKFAFVSSKLLRQMLGW*TGCRATAPTVSKFSAKP 540
L N+ ++L +I+N+ + + +IK + K + +L W TAPT S + P
Sbjct: 312 LGNSSNLL-EIMNAKFPELGLIKRECIEMKWIESVLFWLGIPPGTAPTTSMLNRIP 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,762
Number of Sequences: 28952
Number of extensions: 345400
Number of successful extensions: 864
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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