Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d17
         (677 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-686|AAF47786.2|  354|Drosophila melanogaster CG10862-PA...    35   0.12 
AE014298-2800|AAF48917.3|  380|Drosophila melanogaster CG7440-PA...    29   4.4  
AE014297-652|AAF54150.2|  124|Drosophila melanogaster CG10928-PA...    29   7.7  

>AE014296-686|AAF47786.2|  354|Drosophila melanogaster CG10862-PA
           protein.
          Length = 354

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 393 VPGNNFTVYVLGLAFTSIKLPRTTPTYIKYL*VTPSSFHCNV--NGNL*MNAL-SKNRPV 223
           +PG + TVY  G     I  PR  P Y  YL     ++HCN+  +G + ++ L SK  P 
Sbjct: 244 IPGPSETVYEGGRFRVEIVFPRNYPFYPPYLAFLTKTYHCNIALSGRICLDILGSKWSPA 303

Query: 222 SSTN 211
            S +
Sbjct: 304 LSVS 307


>AE014298-2800|AAF48917.3|  380|Drosophila melanogaster CG7440-PA,
           isoform A protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +2

Query: 302 KYLIYVGVVRGNLIDVNAKPNTYTVK----LLPGTFGNDYRIMLKPRRFNCEITRS-LAI 466
           K L  +GV  G+  D   +   Y +     LL G  G D+ +  K   +N       L+ 
Sbjct: 268 KCLFNLGVKAGDSRDEQLRNRFYPIAPYGALLSGNVGMDFWLY-KYAYYNPRSCMDCLSE 326

Query: 467 VPLNKYFNYMNDKQLITYDYSNY 535
            P+   F+Y++ KQL  YDY NY
Sbjct: 327 YPVA--FHYVHSKQLYVYDYFNY 347


>AE014297-652|AAF54150.2|  124|Drosophila melanogaster CG10928-PA
           protein.
          Length = 124

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 407 SRCQTCPATTSRCTCWVWRSRQSSCR 330
           +R Q    T+S  +CW++  R SSCR
Sbjct: 90  TRSQLTANTSSSRSCWIYSIRMSSCR 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,826,221
Number of Sequences: 53049
Number of extensions: 572738
Number of successful extensions: 1439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)