Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d17
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    31   0.93 
At3g57260.1 68416.m06374 glycosyl hydrolase family 17 protein si...    29   2.8  
At5g39000.1 68418.m04718 protein kinase family protein contains ...    28   4.9  
At2g44600.1 68415.m05552 expressed protein                             27   8.6  

>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 260 FPFTLQWKDDGVTYKYLIYVGVVRGNLIDVNAKPNT-YTVKLLPGTFGNDY 409
           FP  L W     T K + Y GV  GN    ++   T Y  K L G  GN Y
Sbjct: 221 FPVVLDWSIGDKTCKQVEYRGVCGGNSTCFDSTGGTGYNCKCLEGFEGNPY 271


>At3g57260.1 68416.m06374 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase, acidic
           isoform precursor SP:P33157 from [Arabidopsis thaliana]
          Length = 339

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 389 GTFGNDYRIMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITYDYS 529
           G F ++Y+  L+P        +S  +V L  YF+YM D   I  DY+
Sbjct: 172 GRFRDEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYA 218


>At5g39000.1 68418.m04718 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 873

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
 Frame = +2

Query: 182 AKVYETAVREFVEETGRFFDSAFIYKFPFTLQWKDDGVTYKYLIYVGVVRGNLIDVNAKP 361
           A   E+ V +    T R F S F Y FP T      G  +  L +     G+    NA  
Sbjct: 71  ASYQESGVSQIPYMTARIFRSEFTYSFPVT-----PGSNFLRLYFYPTRYGS--QFNAVK 123

Query: 362 NTYTVKLLPGTFGNDYR--IMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITYDYSNY 535
           + ++VK+   T  N++   + +K  +   E      I+P+ +  N      L +  + N 
Sbjct: 124 SFFSVKVNGFTLLNNFSADLTVKASKPQTEFIIKEFIIPVYQTLNLTFTPSLDSLAFVNG 183

Query: 536 IEFFS 550
           IE  S
Sbjct: 184 IEIVS 188


>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -1

Query: 413 YDSRCQTCPATT------SRCTCWVWRSRQSSCRARRLRISNTC 300
           YDSR  +C A+T      S  T   W S+  S R+++   +NTC
Sbjct: 132 YDSRRDSCDASTVFSQPSSATTSRSWFSKVISVRSKKQSTTNTC 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,526
Number of Sequences: 28952
Number of extensions: 262932
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)