Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d16
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    33   0.099
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        29   2.1  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   8.6  
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   8.6  

>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 33.1 bits (72), Expect = 0.099
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 35  PLAID--LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 190
           PL  D  L H  P  S R K  + KR  P P     ++K P  Y++TT+ +H+ RV
Sbjct: 404 PLTRDPTLTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 206 CSTILCQPTGGRARLTEGCSFRRKQ 280
           C  ++CQ +  ++R T+GC ++R++
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 137 KCPGCYKITTVFSHAQRVVVCAGC 208
           +CP CY ++ V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 80  RKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC 208
           R + + +++P+   +    +CP CY ++ V    Q V  C  C
Sbjct: 306 RCYPVSKVLPNVRGF---TQCPRCYPVSKVLPSVQGVTRCPRC 345


>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 92  LKRLVPHPNSYFMDVKCPGCYKI 160
           ++RLVP  NSY + +   GC  I
Sbjct: 95  VRRLVPRTNSYILSIDLEGCTSI 117


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 108 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 206
           H  T + W+L ++  +   Q  + +R+W SA D
Sbjct: 473 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 505


>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 158

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 108 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 206
           H  T + W+L ++  +   Q  + +R+W SA D
Sbjct: 114 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,398
Number of Sequences: 59808
Number of extensions: 237515
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)