Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d16
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           138   1e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   135   1e-32
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           130   5e-31
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    31   0.25 
At2g44870.1 68415.m05586 expressed protein                             30   0.57 
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   5.3  
At3g56410.2 68416.m06274 expressed protein                             27   7.0  
At3g56410.1 68416.m06273 expressed protein                             27   7.0  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    27   7.0  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    26   9.3  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  138 bits (335), Expect = 1e-33
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +2

Query: 44  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 223
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 224 QPTGGRARLTEGCSFRRK 277
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  135 bits (327), Expect = 1e-32
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +2

Query: 44  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 223
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 224 QPTGGRARLTEGCSFRRK 277
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  130 bits (313), Expect = 5e-31
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +2

Query: 44  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 223
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 224 QPTGGRARLTEGCSFRRK 277
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
 Frame = +2

Query: 8   RLCIKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVF 172
           R+C +  T   AI  L   P++E  +    RL+   +     SY +D    GC  ++  F
Sbjct: 717 RICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSF 776

Query: 173 SHAQRVVVCAGCSTIL---CQPTGGR 241
           +  + V  C G + +L    +PT GR
Sbjct: 777 TDDKNVYYCVGTAYVLPEENEPTKGR 802


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 235
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 163 CNLVTARALNIHEIRVRMWH*PLKL 89
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 98  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 220
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 55  RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 98  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 220
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 8   RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 9   GCALKL*PCRSQLICCILPLRRRGGNISLSG*CHILTLISWMLSALAVTRLQQF 170
           GC  K+   R Q+I   + L   GGN +  G C +  L +   S   VT  +QF
Sbjct: 145 GCQAKIPADRPQVIG--VDLESSGGNTTQGGNCKVAFLTNETYSPANVTEPEQF 196


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 92  LKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 223
           ++ + P P+    D+  P   KI   FS  + V    GC  +LC
Sbjct: 117 MEEMKPRPSCIISDLLLPYTSKIARKFSIPKIVFHGTGCFNLLC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,136,180
Number of Sequences: 28952
Number of extensions: 168709
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)