Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d15
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    32   0.50 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    32   0.50 
Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   3.5  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL132862-16|CAB60550.1|  305|Caenorhabditis elegans Hypothetical...    29   4.6  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   6.1  
U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical p...    29   6.1  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    29   6.1  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   6.1  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    28   8.1  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 404  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 243
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 404  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 243
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical
           protein F32D8.8 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -3

Query: 665 SFSSSVWCTVGSVCSTYRIWSSSARPQFRETSRRVKFVVWPILNRFLSAYSSVVAA*KWP 486
           ++S+ V+ T  + CS  + +  +    +R  SRR K   W IL+  ++  S ++ A  + 
Sbjct: 126 NYSTLVYVTSTNKCSDLKYYFQN----YRNNSRRQKPAKWDILSELMTWNSEILGALSFS 181

Query: 485 STGAELNFTV 456
             G  L++ +
Sbjct: 182 FDGVSLHYAM 191


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 157 ANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQGN-PLYLQT 300
           + KL+F      +R    GKYKC    A +N SKE HV++   P+ L +
Sbjct: 278 SGKLEFCLEIPKVRLKDMGKYKCVASLAGLNSSKEFHVERDKIPIVLNS 326


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 440 SRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTCF 261
           S L   C+ +   + C  ++FCS+  L + ++ NN    I S N+ C        C+   
Sbjct: 71  SSLKVTCKLL---SDCQPDEFCST--LGVCDKKNNECLYISSVNVTCKSDCESSTCILLN 125

Query: 260 SLLILIHAC 234
           ++   IH C
Sbjct: 126 NITKEIHCC 134


>AL132862-16|CAB60550.1|  305|Caenorhabditis elegans Hypothetical
           protein Y73F8A.22 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 785 LNGLVCEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFSSSVWCTVGSVC 624
           LNG+ C  WG +     L     ++ TS ++RY    C  + + + +C  G+VC
Sbjct: 247 LNGITCFNWGPNSQEGVLNTCAFIEGTS-IVRYW--DCDATENGNSYCLRGAVC 297


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical
           protein T22F3.7 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 73  KFKFGEDTFTLRYVLGGEQPVRFVARDIANKLKF 174
           KF   E  F    +LG   PVRFV   I++KLKF
Sbjct: 309 KFGVTETGFYASLILGISLPVRFVFALISDKLKF 342


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 785 LNGLVCEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFSSSVWCTVGSVC 624
           LNG+ C  WG +        S  ++ TS ++RY    C  + + + +C  G+VC
Sbjct: 270 LNGITCFNWGPNSQEGVPNASALIEGTS-IVRYW--DCDATENGNSYCLRGAVC 320


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
           C C+R  Y +T+   YSCSC    P + SC
Sbjct: 58  CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +1

Query: 220 KCTFEQACINISKEKHVKQGNPLYLQTQTILLDKIGVIQLFMRSKMTNAAELQNWFYEHV 399
           KC F     +I K  H  +G+PLYL  ++I   KI  I    R     A  LQN   E +
Sbjct: 36  KCFFR----SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGM 91

Query: 400 LP 405
            P
Sbjct: 92  PP 93


>Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical
           protein ZK632.11 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 148 RDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQG 279
           RD   +  F+   +  R+  DG+ +  +    I+  +EKH K G
Sbjct: 121 RDCTQRKDFRRISRKKRESGDGRQRVFYNDVGISKQREKHFKPG 164


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +1

Query: 88  EDTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKA-----IRDHVDGKYKCTF 231
           +  F  + V GG   V  +  D   K+ +K+TKK       +  V+G YK  F
Sbjct: 41  DTVFEFQVVTGGHYDVDLIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACF 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,562
Number of Sequences: 27780
Number of extensions: 378148
Number of successful extensions: 1343
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)