Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d15
         (916 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28690.1 68417.m04099 expressed protein                             33   0.26 
At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51...    30   1.9  
At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type pept...    29   3.2  
At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    29   4.3  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    29   4.3  
At1g63420.1 68414.m07172 expressed protein                             29   5.7  
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa...    28   9.9  

>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 598 DDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRA 741
           DDD    +L  +PT   T++E      +      GEV C DF H + A
Sbjct: 54  DDDDDCVILDFDPTAKETVIETCETDGVLVVGQKGEVACRDFPHPRHA 101


>At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51946
           Cyclin H (MO15-associated protein) {Homo sapiens};
           contains Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 336

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 532 LFKIGQTTNLTRRLVSLNCGRADDDQMRYVLQTEPTVHHTLLE--KLMKQELRPYRNSGE 705
           LF  GQ    + R+ +   G  D D+    + ++P   HT  E  KL+       +N   
Sbjct: 224 LFPPGQLALASLRIANGVLGVIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKC 283

Query: 706 VYCTDFEHIKRALETCLPHCS 768
               D +HI R L++CL H S
Sbjct: 284 PSEKDMKHINRKLKSCLGHSS 304


>At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative
           Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans
           isomerases
          Length = 230

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 464 SLIPLPSRAISMRPRRCCTPKGICSRSARLQT 559
           S IP PSR    +P RC  P   C +  R +T
Sbjct: 17  SSIPFPSRKRQSKPYRCSLPSPGCEKVIRTET 48


>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 604 DQMRYVLQTEPTVHHTLLEKLMKQELRPYR 693
           D  R +L+ E   HH++L+ +MK E + Y+
Sbjct: 365 DNFRIILRGEDVEHHSVLDDMMKIEEKTYK 394


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = -2

Query: 657 EQRVVHGGLG--LQHVPHLVVVGAAA-IQRNQSPRQVCSLADLEQIPFGVQQRRGRIEMA 487
           +Q  +HG +   + ++ +L ++  ++ +     PR++C L+ LE++        G I M 
Sbjct: 305 DQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPME 364

Query: 486 LDGSGIKLYCRLGVLEQAQRRLSG 415
           L         RLG+L+ ++  LSG
Sbjct: 365 LGD-----IPRLGLLDVSRNNLSG 383


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 348 LQDDQRGGAAKLVLRTRVAPVHRPTV-GVEPAPRRPSDSK 464
           L  ++ G  ++  L  +  P HRPT+  ++P P R S+ K
Sbjct: 89  LNQNRSGSCSRTPLLNKKKPSHRPTITTIKPVPVRVSEKK 128


>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 650

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 633 LGLQHVPHLVVVGAAAIQRNQSPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYCR 454
           +G++ +P    +G A   RN+    V  +   ++ PF     +G +  AL   G+K   R
Sbjct: 165 MGVEPLPVHSGLGGAYYFRNKRGESVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKSSVR 224

Query: 453 LG 448
           +G
Sbjct: 225 VG 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,612
Number of Sequences: 28952
Number of extensions: 342032
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)