Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d11
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   5.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.4  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 414 LIPMYCSLSPDLRHVLLHSRLYKY 343
           L+P    LSP LR   L +RL+ Y
Sbjct: 258 LLPSQTGLSPYLRFGCLSTRLFYY 281


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 375 HVLLHSRLYKYTC 337
           H+  HS +Y+Y+C
Sbjct: 277 HMKSHSNVYRYSC 289


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 375 HVLLHSRLYKYTC 337
           H+  HS +Y+Y+C
Sbjct: 35  HMKSHSNVYRYSC 47


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 289 IKISVCSLLPHSMQVIPSP 233
           + +S CS+L  S Q+ P P
Sbjct: 77  VSLSTCSMLCGSTQLWPQP 95


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 130 PTNMSN*ESSLTTMLSIN 77
           P N+SN  +S+T  LSI+
Sbjct: 30  PENLSNKSNSITVPLSIS 47


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -2

Query: 693 GSRRLPPCPPRRGQTPGRSPRPAGVVGANRGPSSWQRTLAGTRRRAKLSNRFLRRL 526
           G+   P   P  G  P   P   G  G N     W +    TR+ ++  N   RRL
Sbjct: 84  GASISPQNTPPAGY-PMDVPHGMGSPGVNVPEYPWMKEKKTTRKSSQQENGLPRRL 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,255
Number of Sequences: 336
Number of extensions: 4123
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)