Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d11
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 38 0.001
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 37 0.002
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 36 0.008
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 35 0.010
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 33 0.040
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 33 0.040
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 32 0.070
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.28
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.49
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 29 0.86
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.1
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 28 1.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 1.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.0
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 2.6
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 2.6
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 3.5
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 4.6
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 4.6
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 6.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 6.1
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 6.1
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 8.0
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 8.0
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 8.0
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 8.0
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +3
Query: 282 ILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANE 461
+L G + I+++ +L+ N C++T G V L ++ L S GT++ W + +
Sbjct: 407 VLSGSDDSTIKIW-SLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKK 465
Query: 462 DIFT-GGKLDRM-RVCSDDTLFATGGEENDLKVWRVGE 569
+ T G ++ + + +D +G + +KVW E
Sbjct: 466 CVHTLFGHIEGVWEIAADHLRLISGAHDGVVKVWEACE 503
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 540 NDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVF 653
++L++WR F KN+ +D L LR VW+T +VF
Sbjct: 166 DELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVF 203
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 35.5 bits (78), Expect = 0.008
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Frame = +3
Query: 273 QTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLG---KVNNTLVSAVSSGTVRVW 443
Q +L + I+ ++ KC+ T + +V+ L K NT S+ GTV+VW
Sbjct: 110 QPFLLTSSDDMTIKCFNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVW 169
Query: 444 GDDANEDIFTGGKLDR------MRVCSDDTLFATGGEENDLKVW 557
++ FT DR D T G++N +KVW
Sbjct: 170 SFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVW 213
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 35.1 bits (77), Expect = 0.010
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVS 422
+T + W + T + +G N ++++ K + + E V L ++ L S
Sbjct: 294 VTSLRWVQRG-THLAVGTHNGSVEIWDAATCKKTRTMSGHTE-RVGALSWNDHVLSSGGR 351
Query: 423 SGTVRVWGDDANEDIFTGGKLDRMRVC-----SDDTLFATGGEENDLKVWRVGESQPTFS 587
+ A E F R VC S++ L A+GG +N L VW E +P +S
Sbjct: 352 DNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEEKPLYS 411
Query: 588 AKN 596
N
Sbjct: 412 FHN 414
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 33.1 bits (72), Expect = 0.040
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +3
Query: 264 NKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNN--TLVSAVSSGTVR 437
N ++ G ++ I++++ + +C+ T + G ++ L ++ +VSA + G V+
Sbjct: 516 NPFSRQLASGSGDRTIRIWN-VDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVK 574
Query: 438 VWGDDANEDIFT-GGKLDRMRVCS---DDTLFATGGEENDLKVWR 560
VW + E + T DR+ + D +L +GG + + VW+
Sbjct: 575 VWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWK 619
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 492 MRVCSDDTLFATGGEENDLKVWRVGESQPTFS 587
M + +TL ATGG E +KVW + + T S
Sbjct: 109 MTIDPTNTLLATGGAEGLVKVWDIAGAYVTHS 140
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 33.1 bits (72), Expect = 0.040
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 405 LVSAVSSGTVRVWGDDANEDIFT----GGKLDRMRVCSDDTLFATGGEENDLKVW-RVGE 569
L+SA S G V++W N + T L + V S ++ATG +K+W +G+
Sbjct: 1194 LISASSDGEVKLWDIRMNHSLQTFSTDNSGLTSLTVHSHAPVYATGSSNQSIKIWDTLGQ 1253
Query: 570 SQPTF 584
+ TF
Sbjct: 1254 NINTF 1258
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 32.3 bits (70), Expect = 0.070
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Frame = +3
Query: 279 EILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNT--LVSAVSSGTVRVWGDD 452
++++ N +++++ + CI T + G+V+ +NN +VSA SG + V+ D
Sbjct: 409 DVILSGANGSLKLWNK-KTTSCIRTIEC--GYVLAASFINNDKCIVSAYKSGELEVY-DI 464
Query: 453 ANEDIFT-----GGKLDRMRVCSDDTLFATGGEENDLKVWRVGES 572
A+ + G + + V D T FAT ++ +K+W + S
Sbjct: 465 ASSSLIERIQAHDGAIWDLAVGHDGTYFATASADHTVKLWSLKSS 509
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 270 EQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVW 443
+ +I++ + +I +Y T G I + + EG V V +TLV+ + TVRVW
Sbjct: 415 DDDKIIVSTCSPRINIYDTKTG-VLIRSLEEHEGDVWTFEYVGDTLVTGSTDRTVRVW 471
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 270 EQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVW 443
E+ + G ++ I+V+ G C Y + + V L N L+S + T+R+W
Sbjct: 558 ERNICISGSMDKSIRVWDLSTGT-CKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIW 614
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +3
Query: 366 EGHVVGLGKVN---NTLVSAVSSGTVRVW 443
EGH G+ V NTLVS TVRVW
Sbjct: 388 EGHKEGVWAVKIHENTLVSGSIDKTVRVW 416
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 429 CH--LTRLIPMYCSLSPDLRHVLL 364
CH LIP YC +S DL+H LL
Sbjct: 518 CHGQCAHLIPDYCGMSNDLKHQLL 541
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 613 SQSWAKFLAENVG--WDSPTRQTFKSFSSPPVANNVSSLQTLILSSFPPVKISSFASSPH 440
S SW+K+L NV WD TR+ F + + P A+ + + SS P ++++S++ +
Sbjct: 259 SSSWSKYLTSNVAKVWD--TRKEFAT-AKIPEASFYGKI--IFSSSGPHIQVASYSGHYY 313
Query: 439 TLTVPL 422
V L
Sbjct: 314 RFAVNL 319
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 201 ENLVDVKSL--QKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGH 374
+N+VD+++L Q C++ N E +I++G + I + ++ + DY E
Sbjct: 382 DNMVDIETLKTQLPPLSQCIQIPNYEHLDIIMGDTKKDIVIQQVVEQLNHVIAGDYFESI 441
Query: 375 VVGLGKVNNTLVSAVSSGTV 434
G ++ LV V + T+
Sbjct: 442 KEEFG-LDTELVDGVMNHTI 460
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 504 SDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWL 614
SDD LF+TGG E +L V+R+ + +P K + H+ L
Sbjct: 707 SDDILFSTGGLE-ELNVYRLIQ-KPEAYLKRIVHEKL 741
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNK-CIYTADYAEGHVVGLGKVNNTLVSAV 419
+ C++W +E T IL N + +Y+ + + ++ A + L +
Sbjct: 435 VNCIDWNLREGTPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGD 494
Query: 420 SSGTVRVW 443
+SG V +W
Sbjct: 495 TSGGVCIW 502
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.0
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = -1
Query: 685 TATTLPPSPGTNTRSVTQTGWRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVSS 506
T+T++PP+ G+++ S T + + + + PT + +S P+ +S
Sbjct: 117 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI-----PPTSTSSTDTNSNPLPTTSTS 171
Query: 505 LQTLILSSFPPVKISSFASSPHTLTV-PLDTADTNVLFTFPRPTTCPSA 362
T +S PP SS S+P T TV P T+ T++ P P T S+
Sbjct: 172 CTTS--TSIPPTGGSSSLSTPITPTVPPTSTSSTSI----PIPPTSTSS 214
Score = 27.1 bits (57), Expect = 2.6
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = -1
Query: 685 TATTLPPSPGTN------TRSVTQTGWRSWSQSWAKFLAENVGWDS---PTRQTFKSFSS 533
T+T++PP+ G++ T +V T S S + +S PT T + S+
Sbjct: 174 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTST 233
Query: 532 PPVANNVSSLQTLILSSFPPVKISSFASSPHTLTVPLDTADTNVLFTFPRPTTCPS 365
SSL T I + PP SS S P T T DTN + P PTT S
Sbjct: 234 SIPTGGSSSLSTPITPTVPPTSTSS-TSIPIPPTSTSST-DTN---SSPLPTTSTS 284
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 538 SSPPVANNVSSLQTLILSSFPPVKISSFASSPHTLTV-PLDTADTNVLFTFPRPTTCPSA 362
SS P+ + +S T +S PP SS S+P T TV P T+ T++ P P T S+
Sbjct: 104 SSSPLPSTSTSCTTS--TSIPPTGGSSSLSTPITPTVPPTSTSSTSI----PIPPTSTSS 157
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Frame = +3
Query: 279 EILIGKKNQQIQVYHTLQGNKCIYTADY-AEGHVVGLGKVNNTLVSAVSSGTVRVWGDDA 455
E LI +++ I +Y +++ +CI ++ + L K + ++ + T +W +
Sbjct: 356 EQLINAEDKHIAIY-SVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLEE 414
Query: 456 NEDI--FTGGKLDRMRVCS-----DDTLFATGGEENDLKVW 557
N + + G KL + S DDT +G E++ +++W
Sbjct: 415 NRIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIW 455
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 504 SDDTLFATGGEENDLKVWRVGESQPTFSAKN 596
SD A+GG +N +++W S P F+ N
Sbjct: 314 SDGLQLASGGNDNVVQIWDARSSIPKFTKTN 344
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 510 DTLFATGGEENDLKVWRVGESQPTFSAKN-LAHDWLQLRQPVWVTDLVFVPGEGGRVVAV 686
+++F N +++W++ E++ F ++ L HDW + Q W + G + V
Sbjct: 237 ESVFMRTSGRNQIQLWKL-ENKTNFKSEFILYHDWGSVLQLEWCPTISVEDSILGFLAVV 295
Query: 687 CS 692
CS
Sbjct: 296 CS 297
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Frame = +3
Query: 375 VVGLGKVNNTLVSAVSSGTVRVWGDD--ANEDIFTG-----GKLDRMRVC------SDDT 515
+V N S G V+VW D + +F G LD +C S+
Sbjct: 177 IVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQL 236
Query: 516 LFATGGEENDLKVWRVGESQP 578
ATG +N + +W+ +S P
Sbjct: 237 TLATGAADNTVCLWKASQSTP 257
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 602 PRLAPTTPAGLGDRPGVCPRRGGQGGSR 685
P+ A PAG G R G RGG+GGSR
Sbjct: 127 PKGARNGPAGRGGRGGF---RGGRGGSR 151
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 526 VANNVSSLQTLILSSFPPVKISSFASSPHTLTVPLDTADTNVLFTFPRPT 377
++ N +L+ S+ ++SSP TLT P AD + +FP PT
Sbjct: 321 ISKNYETLKEKYASAANYTGDGDYSSSPATLTCP---ADDSYFTSFPLPT 367
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.6
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVS 422
+T + W K T++ +G + I ++ ++ K + + V L +NTL S
Sbjct: 169 VTSVLWTGKG-TQLAVGTDSGVIYIWD-IESTKSVRSLKGHSERVAALAWNDNTLTSGGK 226
Query: 423 SGTVRVWGDDANEDIFTGGKLDRMRVCS---DDTL--FATGGEENDLKVWRVGESQP 578
+ A K+ +C D +L A+GG +N+L VW S+P
Sbjct: 227 DEVILHHDLRAPGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDYRSSRP 283
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 309 IQVYHTLQGNKCI-YTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKL 485
+Q+ HTL+ I Y A+G + G +V V +G + + + +
Sbjct: 278 VQLLHTLEHTSVICYVRFSADGKFLATGCNRAAMVFNVETGKLITLLQEESSKREGDLYV 337
Query: 486 DRMRVCSDDTLFATGGEENDLKVWRVGESQ 575
+ D ATG E+ +++W + + +
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQKR 367
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.1
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +3
Query: 396 NNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCS----DDTLFATGGEENDLKVWRV 563
NN L+S+ T R+W + + D + + DD F +G + L++W +
Sbjct: 320 NNFLLSSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSI 379
Query: 564 GESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVA 683
E +F W +L P +T + F P +GG +A
Sbjct: 380 KEKAVSF--------WNEL--PELITAVAFSP-DGGLAIA 408
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 589 AENVGWDSPTRQTFKSFSSPPVANNVSSLQTLILSSFPPVKISSFASSPHTL 434
+E V W + Q F P ++ ++ + ILS P I S A S TL
Sbjct: 218 SETVTWLNTFLQQFWYIFEPSLSERITEITDQILSENVPSFIDSMALSEFTL 269
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 447 DDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQP 578
D ANE+ G ++ + LF TGG + +KVW + + P
Sbjct: 538 DGANEEEVDAG-INMAQWQPKGNLFVTGGSDGIVKVWDLRLNNP 580
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 460 SFASSPHTLTVPLDTADTNVLFTFPRPTTCP 368
SFAS + + P ++ + N+ + FP TT P
Sbjct: 202 SFASKGNEILDPGESTNKNLFYEFPNGTTEP 232
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 510 DTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLR 623
D + A+GG+++ + +W+V E H +L+
Sbjct: 94 DQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPIAELK 131
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 601 AKFLAENVGWDSPTRQTFKSFSSPP 527
A+F + N+ W + R +KSF P
Sbjct: 38 ARFQSNNLSWSNRNRVVYKSFQPNP 62
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +3
Query: 516 LFATGGEENDLKVWRVGESQPTFSAKNLA 602
LFA+G + ++++W++ E +F +A
Sbjct: 425 LFASGSWDGNIRLWKIAEGLRSFEPLTIA 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,883
Number of Sequences: 5004
Number of extensions: 66109
Number of successful extensions: 251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -