Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d11
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31214| Best HMM Match : WD40 (HMM E-Value=0.27) 54 9e-08
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 34 0.098
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.40
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 31 0.69
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 31 1.2
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 30 2.1
SB_46201| Best HMM Match : WD40 (HMM E-Value=0) 30 2.1
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 30 2.1
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 4.9
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 29 4.9
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26) 28 6.5
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 28 8.5
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2) 28 8.5
SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2) 28 8.5
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 28 8.5
>SB_31214| Best HMM Match : WD40 (HMM E-Value=0.27)
Length = 268
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 525 TGGEENDLKVWRV-GESQPTFSAKNLAHDWLQLRQPVWVTDLVFV 656
+GG ENDLK+W + Q TF AKN+ +D L LR VWVTDL F+
Sbjct: 81 SGGRENDLKLWNLENPGQATFKAKNVRNDSLDLRVQVWVTDLAFL 125
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 37.9 bits (84), Expect = 0.008
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Frame = +3
Query: 279 EILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDAN 458
++ G ++Q+ ++ KC++ EG + LG L SA + T+RVW D+
Sbjct: 183 QVATGSMDKQVMIWDAAT-LKCLHILSGHEGSIRALGANTANLFSASADCTIRVWKRDSF 241
Query: 459 EDIFT-GGKLDRMRVC-SDDTLFATGGEEN----DLKVWRVGESQPTFSAKNLAH 605
E + T K +C S+ LFA G E DLK W + + N H
Sbjct: 242 ELMHTLEQKSPISSLCVSNRHLFAYGVSEGVQYWDLKKWEKVHQIAIYGSINYMH 296
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 276 TEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVW 443
T I+ G + I+V+H G +C++T + G+ NNTLVS + TV++W
Sbjct: 490 TYIVSGSLDTSIRVWHAETG-QCLHTLVGHQSLTSGMELRNNTLVSGNADSTVKIW 544
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 34.3 bits (75), Expect = 0.098
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 684 RLPPCPPRRGQTPGR-SPRPAGVVGANRGPSSWQR 583
R P CPP GQTPGR SP+ GV+ +R S R
Sbjct: 1010 RRPRCPPGSGQTPGRSSPKGNGVLVFDRPKPSQDR 1044
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +3
Query: 240 GITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAV 419
G+ C+++ N+ I+ G + I V+H ++ + ++ +G V L NTLVS
Sbjct: 564 GVRCLQFDNER---IISGSWDMTIMVWHIVKFTR-LHVLYGHKGCVSCLRFDENTLVSGS 619
Query: 420 SSGTVRVWGDDANEDIFT-GGKLDRMRVCSDDTLFA-TGGEENDLKVWRV 563
T+RVW E + G + D F +G + +K+W V
Sbjct: 620 HDSTIRVWDMRTWECVLVLQGHEGAVSCLEFDAPFVLSGSADKTIKLWNV 669
>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 375 HVLLHSRLYKYTCFL--VKCGKLVSVGFSFQSKFQFVLCYPIPCK 247
H+L R YKY CFL +C L+ QS F + Y +P K
Sbjct: 232 HMLFCRRCYKYDCFLHGSECPGLLRFNEPHQSSVGFTVLYQLPTK 276
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 705 RSRVGSRRLPPCPPRRGQTPGRSPRPAGVVGANRGPSSWQRTLAGTRRRAKLSNR 541
+SR SR P P RR ++ RSPR R P S+ R+ +G+ RR++ +R
Sbjct: 456 QSRSHSRSRSPSPRRRSRSRSRSPR--------RRPKSYSRSPSGSPRRSRSKSR 502
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +3
Query: 228 QKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTL 407
+ +G+ C+++ + +I+ G ++ I+V+ + C+ G V+ L N +
Sbjct: 188 ENSKGVYCLQY---DDHKIVSGLRDNTIKVWDK-KSLACVKVLTGHTGSVLCLQYDENVI 243
Query: 408 VSAVSSGTVRVWGDDANEDIFT 473
V+ S TVRVW A + + T
Sbjct: 244 VTGSSDSTVRVWNVHAGDMLNT 265
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 378 VGLGKVNNTLVSAVSSGTVRVWGDDANEDIFT-GGKLDRMR---VCSDDTLFATGGEEND 545
+ L K + V+ V+VW ++ T G D ++ +C D +L A+GG +
Sbjct: 1006 IALSKNGDFCVTGSDDSLVKVWDGKIYSELMTFSGHTDCVQAIALCPDSSLAASGGNDCV 1065
Query: 546 LKVWRVGESQPTFSAK 593
+ +W + S K
Sbjct: 1066 INIWNLAPFSRKLSLK 1081
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 387 GKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDR---MRVCSDDTLFATGGEENDLKVW 557
GK N+ L +S +R++ + + G + VC+D T TG +++ ++VW
Sbjct: 144 GKTNDHLAVVTNSNQLRLYNLETLDCRMVEGHSKMILCLDVCADGTKIVTGSKDHTVRVW 203
Query: 558 RVGE-SQPTFSAKNLAH 605
V + S P A H
Sbjct: 204 DVSDCSNPRCLAVGNGH 220
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 176 HEKQQEMH----RKLGRR*IFTERRRYNLHGMG*QRTN*NFDWKEKPTDTSLPHFTRKQV 343
HEK+QE R+ R + R LHG ++ +F+ P DTS P F R+
Sbjct: 1088 HEKEQEKRMNAEREAIRNQVMVRERMKELHGAEAEK---HFNLFRHPRDTSPPQFLRRDF 1144
Query: 344 Y 346
Y
Sbjct: 1145 Y 1145
>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 649 TRSVTQTGWRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVSSLQTLILSS 482
T ++ Q G + +Q+WA +N+ WD + +T PV+ + S ++ SS
Sbjct: 431 TATMNQVGCKREAQTWASLSEKNMTWDQNSHKTCFIDDGNPVSFDGSKAYEVLNSS 486
>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 729
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 176 HEKQQEMH----RKLGRR*IFTERRRYNLHGMG*QRTN*NFDWKEKPTDTSLPHFTRKQV 343
HEK+QE R+ R + R LHG ++ +F+ P DTS P F R+
Sbjct: 284 HEKEQEKRMNAEREAIRNQVMVRERMKELHGAEAEK---HFNLFRHPRDTSPPQFLRRDF 340
Query: 344 Y 346
Y
Sbjct: 341 Y 341
>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
Length = 292
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 369 GHVVGLGKVNNTLVSAVSSGTVRVWGDDANE--DIFTG--GKLDRMRVCSDDTLFATGGE 536
G + L ++ LV+ + T + WG ++NE + F G G + + V L TG
Sbjct: 158 GTYIDLDNNDDILVTGSADNTAKAWGMNSNECMNTFKGHEGAILCLAVDGKGRLLFTGSS 217
Query: 537 ENDLKVWRVGESQPTFSAK 593
++ ++ W + P S K
Sbjct: 218 DSTIRSWDLHTYSPLKSFK 236
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 405 LVSAVSSGTVRVWGDDANEDIFT-GGKLDR-MRVC---SDDTLFATGGEENDLKVWRV 563
LV++ G+ +VW + N+ I G + R M VC D + +GGE+ ++ WRV
Sbjct: 38 LVTSSYDGSAQVWDVETNQPIANYRGHVGRVMSVCWSYLDPDVVFSGGEDGTVRPWRV 95
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 237 EGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNT---- 404
+G+TC+ + +++ +++L G + I++ H L+ K T GH + V T
Sbjct: 308 KGVTCVTF-SRDASQLLSGSFDMTIRM-HGLKSGK---TLKEFRGHTSFVNDVIFTADAH 362
Query: 405 -LVSAVSSGTVRVWGDDANE 461
++SA S GT+++W + E
Sbjct: 363 HIISASSDGTIKIWNIKSTE 382
>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 708 SRSRVGSRRLPPCPPRRGQTPGRSPRPAGVVGANRGPSSWQRTLAGTRR 562
+R R +R P P R+G++PG RP+ V P + +R+ +R+
Sbjct: 154 ARRRTAARSSPSPPKRQGRSPG---RPSNVTAEKNEPETPKRSPVRSRK 199
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 678 PPCPPRRGQTPGRSPRPAGVV-GANRGPSSW 589
PP PP G+ GR P A ++ G N P SW
Sbjct: 88 PPLPPSNGKC-GRKPAGARIINGQNAQPHSW 117
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +3
Query: 291 GKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLG--KVNNTLVSAVSSGTVRVWGDDANED 464
G K++ I+++ +K I+T + GL + ++ L SA TV++W D
Sbjct: 132 GGKDKLIRIWDP-DTSKHIHTFKGHRDVISGLAFRRGSHQLFSASHDKTVKIWNLDEMAY 190
Query: 465 IFT-GGKLDRMR---VCSDDTLFATGGEENDLKVWR-VGESQPTFSAKNLAHDW 611
+ T G D + S D GG + L++W+ V ESQ F+ W
Sbjct: 191 VETLFGHQDAVTGIDSLSRDRAATAGGRDRTLRIWKVVEESQLVFNGAGSLTMW 244
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 246 TCMEWG-NKEQTEILIGKKNQQIQVYHTLQGNKC-IYTADYAEGHVVGLGKVNNTLVSAV 419
TC+ + + + + +G + +Q++++ + +Y H VG+ K ++ LVS
Sbjct: 720 TCLSLAFSPDDSIVAMGFSDTTVQLWNSKTFARLGVYKGHKGWAHSVGISKDSSKLVSGS 779
Query: 420 SSGTVRVWGDD 452
TV++W D
Sbjct: 780 EDETVKIWTID 790
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 28.7 bits (61), Expect = 4.9
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Frame = +3
Query: 198 IENLVDVKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHV 377
+ L D+ S G+ +T + W + + +G +Q++ K + T D GH
Sbjct: 53 VTKLCDLSS--DGDSVTSVSWSERNGL-VSVGTYKGLVQIWDA-SAQKKLLTMD---GHS 105
Query: 378 VGLGKV--NNTLVSAVSSGTVRVWGDDANEDIFTGGKLD-RMRVCS-----DDTLFATGG 533
+G + N ++S+ S + + D + + R VC D A+GG
Sbjct: 106 ARVGALAWNGDMLSSGSRDRLILQRDTRSPTQLERRLVGHRQEVCGLKWSPDHQHLASGG 165
Query: 534 EENDLKVWRVGESQP 578
+N L VW + S P
Sbjct: 166 NDNKLLVWNLSGSTP 180
>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
Length = 490
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +3
Query: 378 VGLGKVNNTL-VSAVSSGTVRVWGDDANEDIF--TGGK--LDRMRVCSDDTLFATGGEEN 542
VG+ VN+ L VS VW E +F TG K + D L A+G
Sbjct: 85 VGVDPVNSLLAVSGGEDDKAYVWKLANGEVMFECTGHKDSVTHTGFSHDSKLVASGDMSG 144
Query: 543 DLKVWRVGESQPTFSAKNLAHDWLQLRQPV 632
+KVW Q +S + +WL V
Sbjct: 145 MIKVWNASTGQEVWSFECADLEWLDWHHAV 174
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 507 DDTLFATGGEENDLKVWRVGESQPTFS 587
D L TG + +K+W+ G Q TF+
Sbjct: 157 DHGLMLTGSADKTIKLWKAGSCQSTFT 183
>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 401
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 684 RLPPCPPRRGQTPGRSPRPAGVVGANRGPSSWQR 583
R+PP PR P R PR +G +G R R
Sbjct: 65 RVPPWVPRERGDPVRPPRHSGALGHRRSDGGCPR 98
>SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 221
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 684 RLPPCPPRRGQTPGRSPRPAGVVGANRGPSSWQR 583
R+PP PR P R PR +G +G R R
Sbjct: 65 RVPPWVPRERGDPVRPPRHSGALGHRRSDGGCPR 98
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 471 TGGKLDRMRVCSDDTL--FATGGEENDLKVWRVGESQPT 581
+ G + M + DD++ F TGG + LKVW Q T
Sbjct: 486 SAGSIQGMDIALDDSVTHFVTGGADKLLKVWDYDAGQVT 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,405,087
Number of Sequences: 59808
Number of extensions: 523521
Number of successful extensions: 1690
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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