Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d11
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.53 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.70 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.93 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.93 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.7  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 408 PMYCSLSPDLRHVLLHSRLYKYTCFLV 328
           P +C +SP L  +   +RL K   F+V
Sbjct: 56  PFFCDMSPSLSLLCADTRLNKLAVFIV 82


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 408 PMYCSLSPDLRHVLLHSRLYKYTCFLV 328
           P +C +SP L  V   +RL K   F+V
Sbjct: 55  PFFCDMSPLLSLVCADTRLNKLAVFIV 81


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 429 CHLTRLIPMYCSLSPDLRHVLLHSR 355
           C +TR+IP  CS +  L  +LL  R
Sbjct: 232 CTITRVIPQVCSGNCKLNDILLTVR 256


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 429 CHLTRLIPMYCSLSPDLRHVLLHSR 355
           C +TR+IP  CS +  L  +LL  R
Sbjct: 232 CTITRVIPQVCSGNCKLNDILLTVR 256


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 523  ANNVSSLQTLILSSFPPVKISS 458
            A+NV+++ T + +  PPVK+ S
Sbjct: 953  ASNVTNVTTNLTTILPPVKVQS 974


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 414 LIPMYCSLSPDLRHVLLHSRLYKY 343
           L+P    LSP LR   L +RL+ Y
Sbjct: 262 LLPSQTGLSPYLRFGCLSTRLFYY 285


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 395 HFPQTYDMSFCIV 357
           HFP  +  +FCI+
Sbjct: 117 HFPYVFGEAFCII 129


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 684 RLPPCPPRR 658
           RLPP PP+R
Sbjct: 636 RLPPLPPKR 644


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 315 VYHTLQGNKCIYT 353
           +YH L+GN+ IY+
Sbjct: 621 LYHVLRGNENIYS 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,210
Number of Sequences: 438
Number of extensions: 4599
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)