Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d11
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 40 0.002
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 38 0.007
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 36 0.026
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 36 0.026
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 34 0.080
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 34 0.080
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 34 0.11
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 34 0.11
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 33 0.25
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 33 0.25
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 33 0.25
At1g36510.1 68414.m04539 hypothetical protein 32 0.32
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 32 0.43
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 32 0.43
At5g14570.2 68418.m01709 transporter, putative similar to trans-... 32 0.43
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 32 0.43
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ... 31 0.57
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ... 31 0.57
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 0.75
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 31 0.75
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 31 0.75
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 31 0.75
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 31 0.75
At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare cold-in... 31 0.99
At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase fam... 30 1.3
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 30 1.3
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 29 3.0
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 29 3.0
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein... 29 4.0
At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase f... 28 5.3
At1g44160.1 68414.m05100 DNAJ chaperone C-terminal domain-contai... 28 5.3
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 28 5.3
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 28 5.3
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 28 7.0
At4g29550.1 68417.m04214 expressed protein contains Pfam profile... 28 7.0
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 28 7.0
At2g06914.1 68415.m00786 hypothetical protein 28 7.0
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 7.0
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 7.0
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 27 9.2
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 27 9.2
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 27 9.2
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 336 NKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGD--DANEDIFTGGKLDRMRVCSD 509
N I T EGHV L + L + S +RVW D D + T G + + V D
Sbjct: 124 NGLIGTVVRQEGHVYSLAASGDLLFTGSDSKNIRVWKDLKDFSGFKSTSGFVKAIVVTRD 183
Query: 510 DTLFATGGEENDLKVWRVGESQP 578
+ +F TG ++ ++VWR + P
Sbjct: 184 NRVF-TGHQDGKIRVWRGSKKNP 205
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 336 NKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIF--TGGKLDRMRVCSD 509
N I T +GHV L + L + S +RVW D + F T G + + + D
Sbjct: 128 NGLIGTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWKDLKDHTGFKSTSGLVKAIVITGD 187
Query: 510 DTLFATGGEENDLKVWR 560
+ +F TG ++ ++VWR
Sbjct: 188 NRIF-TGHQDGKIRVWR 203
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 321 HTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIF-TGGKLDRMR 497
+ L+ N I + EGH+ L + L + S +RVW + F + L +
Sbjct: 110 NVLETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEHAGFKSSSGLIKAI 169
Query: 498 VCSDDTLFATGGEENDLKVWRVGESQP 578
V D +F TG ++ +++W+V + +P
Sbjct: 170 VIFGDRIF-TGHQDGKIRIWKVSKRKP 195
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 366 EGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIFTGGK----LDRMRVCSDDTLFATGG 533
EGH+ L N+ L + + +RVW + NE F+G K L + V S + TG
Sbjct: 24 EGHIYSLAATNDLLYTGSDNNYIRVW-KNLNE--FSGFKSNSGLVKAIVISREAKVFTGH 80
Query: 534 EENDLKVWRVGESQP 578
++ ++VW+ P
Sbjct: 81 QDGKIRVWKTSSKNP 95
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 34.3 bits (75), Expect = 0.080
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 366 EGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIF-TGGKLDRMRVCSDDTLFATGGEEN 542
EGH+ L + L + S +RVW + F + L + V + D +F TG ++
Sbjct: 98 EGHIYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGDKIF-TGHQDG 156
Query: 543 DLKVWRVGESQ 575
++VW+ +
Sbjct: 157 KIRVWKAASKE 167
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 34.3 bits (75), Expect = 0.080
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +3
Query: 297 KNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIF-T 473
+ Q V L N I + EGH+ L + L + S +RVW + F
Sbjct: 73 QTQWSTVEENLPQNGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSAFKC 132
Query: 474 GGKLDRMRVCSDDTLFATGGEENDLKVWRV 563
L + V S + +F TG ++ ++VW+V
Sbjct: 133 NSGLVKAIVISGEKIF-TGHQDGKIRVWKV 161
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 33.9 bits (74), Expect = 0.11
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Frame = +3
Query: 225 LQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKV--N 398
L + + ++W +E + I IG + Q+QV+ G +C GH G + N
Sbjct: 212 LGPNDSVCSVQW-TREGSYISIGTSHGQVQVW---DGTQCKRVRTMG-GHQTRTGVLAWN 266
Query: 399 NTLVSAVSSGT------VRVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWR 560
+ ++S+ S +RV D ++ + ++ ++ DD A+GG +N L VW
Sbjct: 267 SRILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 326
Query: 561 VGESQP 578
QP
Sbjct: 327 NHSQQP 332
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 258 WGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEG-HVVGLGKVN-NTLVSAVSSGT 431
+G +Q I G ++ Q+ ++H G + +A + V N + L SA GT
Sbjct: 496 FGGYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGT 555
Query: 432 VRVWGDD 452
+R+WG D
Sbjct: 556 IRIWGLD 562
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 387 GKVNNTLVSAVSSGTVRVWGDDANE-----DIFTGGKLDRMRVC--SDDTLFATGGEEND 545
G +N T+VS +R+W + + D G K D +C +DD+ F TG +
Sbjct: 157 GPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 546 LKVW 557
K+W
Sbjct: 217 AKLW 220
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 387 GKVNNTLVSAVSSGTVRVWGDDANE-----DIFTGGKLDRMRVC--SDDTLFATGGEEND 545
G +N T+VS +R+W + + D G K D +C +DD+ F TG +
Sbjct: 157 GPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 546 LKVW 557
K+W
Sbjct: 217 AKLW 220
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 387 GKVNNTLVSAVSSGTVRVWGDDANE-----DIFTGGKLDRMRVC--SDDTLFATGGEEND 545
G +N T+VS +R+W + + D G K D +C +DD+ F TG +
Sbjct: 157 GPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 546 LKVW 557
K+W
Sbjct: 217 AKLW 220
>At1g36510.1 68414.m04539 hypothetical protein
Length = 351
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 438 VWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQ 617
V+ DD I G LD ++ DT+ + G E+ + V E++ + SA L ++ Q
Sbjct: 80 VYYDDVLGQIVDVGSLDSIKAKGKDTVKLSAGSEDLIHV--DSENKTSHSAVTLYEEFFQ 137
Query: 618 LRQPVWVTDLVF 653
L + V D+V+
Sbjct: 138 LNEKKTVEDIVY 149
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSA-V 419
+ C++ G K ++ G ++ ++ ++ + N + ++ G + LV+A
Sbjct: 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGA 78
Query: 420 SSGTVRVWGDDANEDI--FTGGKLDRMRVCSDD--TLFATGGEENDLKVWRV 563
+SGT+++W + + + TG + + + V FA+G + +LK+W +
Sbjct: 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSA-V 419
+ C++ G K ++ G ++ ++ ++ + N + ++ G + LV+A
Sbjct: 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGA 78
Query: 420 SSGTVRVWGDDANEDI--FTGGKLDRMRVCSDD--TLFATGGEENDLKVWRV 563
+SGT+++W + + + TG + + + V FA+G + +LK+W +
Sbjct: 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130
>At5g14570.2 68418.m01709 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 397
Score = 31.9 bits (69), Expect = 0.43
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -1
Query: 676 TLPPSPGTNTRSVTQTG----WRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVS 509
T PPS +T V G +R +S S A ++ W S F +FS PP+ +S
Sbjct: 8 TKPPSFSDSTIPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVIS 67
Query: 508 SLQTLILSSFPPVKISSFASS 446
S L S+ I+SFA S
Sbjct: 68 SDLNLSASTVSAAGIASFAGS 88
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 31.9 bits (69), Expect = 0.43
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -1
Query: 676 TLPPSPGTNTRSVTQTG----WRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVS 509
T PPS +T V G +R +S S A ++ W S F +FS PP+ +S
Sbjct: 8 TKPPSFSDSTIPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVIS 67
Query: 508 SLQTLILSSFPPVKISSFASS 446
S L S+ I+SFA S
Sbjct: 68 SDLNLSASTVSAAGIASFAGS 88
>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 945
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Frame = +3
Query: 216 VKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHT--LQGNKCIYTADYAEGHVVGLG 389
++ L K G C + + +I + I +T ++G+K +Y + G+++ G
Sbjct: 202 LEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRVEGDKTLYPVLLSNGNLISQG 261
Query: 390 KVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGE 569
+ A+ W D + + + V DDT G + LK+W E
Sbjct: 262 DIEGGRHYAL-------WEDPFKKPCYLFALVAGQLVSRDDTFTTRSGRQVSLKIWTPAE 314
Query: 570 SQP 578
P
Sbjct: 315 DLP 317
>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
SP|P04825 Aminopeptidase N (EC 3.4.11.2)
(Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
contains Pfam profile PF01433: Peptidase family M1
Length = 918
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Frame = +3
Query: 216 VKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHT--LQGNKCIYTADYAEGHVVGLG 389
++ L K G C + + +I + I +T ++G+K +Y + G+++ G
Sbjct: 202 LEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRVEGDKTLYPVLLSNGNLISQG 261
Query: 390 KVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGE 569
+ A+ W D + + + V DDT G + LK+W E
Sbjct: 262 DIEGGRHYAL-------WEDPFKKPCYLFALVAGQLVSRDDTFTTRSGRQVSLKIWTPAE 314
Query: 570 SQP 578
P
Sbjct: 315 DLP 317
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.1 bits (67), Expect = 0.75
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSA-V 419
+ C++ G K ++ G ++ ++ ++ + N + ++ G + LV+A
Sbjct: 112 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGA 171
Query: 420 SSGTVRVWGDDANEDI--FTGGKLDRMRVCSDD--TLFATGGEENDLKVWRV 563
+SGT+++W + + + TG + + + V FA+G + +LK+W +
Sbjct: 172 ASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDI 223
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 31.1 bits (67), Expect = 0.75
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +3
Query: 195 CIENLVDVKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGH 374
C + + L E + + W + T + IG + +Q++ L+ K I T +
Sbjct: 196 CSSKVTKLCDLGVDETVCSVGWALRG-THLAIGTSSGTVQIWDVLRC-KNIRTMEGHRLR 253
Query: 375 VVGLGKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVC-----SDDTLFATGGEE 539
V L ++ L S ++ ED + K + +C SD+ A+GG +
Sbjct: 254 VGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGND 313
Query: 540 NDLKVWRVGESQP 578
N L VW +QP
Sbjct: 314 NKLFVWNQHSTQP 326
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 405 LVSAVSSGTVRVWGDDANE---DIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQ 575
+VS + R+W D+ E + G + C D+L T GE+ +VW V +Q
Sbjct: 250 IVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQ 309
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 405 LVSAVSSGTVRVWGDDANE---DIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQ 575
+VS + R+W D+ E + G + C D+L T GE+ +VW V +Q
Sbjct: 250 IVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQ 309
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +3
Query: 387 GKVNNTLVSAVSSGTVRVWGDDANE-----DIFTGGKLDRMRVC--SDDTLFATGGEEND 545
G +N T+VS +R+W + + D G K +C +DD+ F TG +
Sbjct: 184 GPLNQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKT 243
Query: 546 LKVW 557
K+W
Sbjct: 244 AKLW 247
>At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare
cold-inducible protein (RCI3A) (PRC) identical to
SP|O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox
P3) (Rare cold inducible protein) (RCI3A) (ATPRC)
{Arabidopsis thalliana}
Length = 326
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 532 PPVANNVSSLQTLILSSFPPVKISSFASSPHTLTVPLDTADTNVLFTF 389
PP +N+++LQTL + +K S HT+ V ++ TN L+ F
Sbjct: 161 PPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLYNF 208
>At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 546
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -1
Query: 586 ENVGWDSPTRQTFKSFS-SPPVANNVSSLQTLILSSFP-PVKISSFASSPHTLTVPLDTA 413
+ V +DS + +F SPPV N +++ + + SFP V++ S SSP + + L
Sbjct: 254 DEVIFDSIVKHKVTNFGGSPPVLNMIANARDSVKKSFPWTVQVMSGGSSPPEVMLKLKKL 313
Query: 412 DTNVLFTF 389
V+ +
Sbjct: 314 GFKVMMAY 321
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 477 GKLDRMRVCSDDTLFATGGEENDLKVWRV 563
GK+ ++ D ATGGE+ +K+WR+
Sbjct: 199 GKIWTLKFSPDGKYLATGGEDGVVKIWRI 227
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 378 RHVLLHSRLYKYTCFLVKCGKLVSVGFSFQS 286
RH L+H+ Y C CGK S+ F+ +S
Sbjct: 127 RHYLIHTGERNYICTYEGCGKAFSLDFNLRS 157
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Frame = +3
Query: 303 QQIQVYHTLQG--NKCIYTADYAEGHVVGLGKVNNTLVSAVS----SGTVRVWGDDAN-- 458
+++ ++H QG +K + + G + + + ++ S V+ G++R+W +
Sbjct: 39 EKVGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTC 98
Query: 459 EDIFTG--GKLDRMRVCSDDTLFATGGEENDLKVWR-VGES 572
E F G + +R ++ A+G ++ND+ +W VGES
Sbjct: 99 EVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGES 139
>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
thaliana}
Length = 631
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -1
Query: 658 GTNTRSVTQTGWRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPP----VANNVSSLQTLI 491
G N+ S +T WSQ F++ + ++ P + + + S PP +A + LQ +
Sbjct: 215 GNNSSSDMETIENKWSQ----FMSHDTSFNFPPQSQYGTISYPPSKVDIALECARLQNRM 270
Query: 490 LSSFPPVKISSFASSPH 440
L PP+ + + +
Sbjct: 271 LPPVPPLYVEGLTHNEY 287
>At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 259
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 544 SFSSPPVANNVSSLQTLILSSFPP 473
S S PP ANN+ L IL + PP
Sbjct: 41 SLSQPPEANNIFDLFVYILENLPP 64
>At1g44160.1 68414.m05100 DNAJ chaperone C-terminal
domain-containing protein contains Pfam profile PF01556:
DnaJ C terminal region
Length = 357
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +3
Query: 381 GLGKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCSDDTLFAT 527
G+GK N V VS VR + D F G K R CS +T AT
Sbjct: 72 GIGK--NNKVEGVSLCKVRSYRFDNTNTNFVGSKKSLSRSCSQNTATAT 118
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKV--NNTLVSA 416
+ C+ + Q + G + +++V++ + G C T V L + N++L+SA
Sbjct: 352 VNCVTYSPDSQL-LATGADDNKVKVWNVMSGT-CFITFTEHTNAVTALHFMADNHSLLSA 409
Query: 417 VSSGTVRVW 443
GTVR W
Sbjct: 410 SLDGTVRAW 418
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 507 DDTLFATGGEENDLKVWRV 563
D L ATG ++N +KVW V
Sbjct: 360 DSQLLATGADDNKVKVWNV 378
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 243 ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKV--NNTLVSA 416
+ C+ + Q + G + +++V++ + G C T V L + N++L+SA
Sbjct: 392 VNCVTYSPDSQL-LATGADDNKVKVWNVMSGT-CFITFTEHTNAVTALHFMADNHSLLSA 449
Query: 417 VSSGTVRVW 443
GTVR W
Sbjct: 450 SLDGTVRAW 458
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 507 DDTLFATGGEENDLKVWRV 563
D L ATG ++N +KVW V
Sbjct: 400 DSQLLATGADDNKVKVWNV 418
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 516 LFATGGEENDLKVWRVGESQPTFSAKN 596
L ATG + +K+W + +QP++ A N
Sbjct: 360 LLATGSADESVKLWDLSNNQPSWIATN 386
>At4g29550.1 68417.m04214 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 358
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 432 VRVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDW 611
++ W D+A +DI+ G + + SDDTL + +++ +RV ES H+W
Sbjct: 217 IKRWNDEAIDDIYKGNLPEWI---SDDTLMSCSEQDH---FYRVQESDIR------EHNW 264
Query: 612 LQL 620
LQL
Sbjct: 265 LQL 267
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 529 PVANNVSSLQTLILSSFPPVKISSFASSPHTLTVP 425
PVA+ + TLIL P++++ P LTVP
Sbjct: 170 PVADKLMVAATLILLCTKPIQVAELGPLPWLLTVP 204
>At2g06914.1 68415.m00786 hypothetical protein
Length = 158
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -2
Query: 519 IMYHRCRPSSYPASRQ*KYLHSHHRPIL*RCHLTRLIPMYCSLSPDLRHVLLHSRLYKYT 340
+ YH S +Y H HH I HLT ++ +++ L H + + L+ T
Sbjct: 13 VEYHHESHSITSLDHLVEYHHLHHLTITRSHHLTTRSSIFITVTRSLYHQVEYHHLHHST 72
Query: 339 CFLVKCGKLVSVGFS 295
+ V ++ S+ S
Sbjct: 73 SYSVASFRVFSIPHS 87
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +3
Query: 450 DANED---IFTGGKLDRMRV-CS--DDTLFATGGEENDLKVWRVG 566
D N+D FTG K + + CS D TL ATGG ++ +W++G
Sbjct: 57 DENDDSVHTFTGHKGELYALACSPTDATLVATGGGDDKAFLWKIG 101
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/83 (27%), Positives = 34/83 (40%)
Frame = +3
Query: 270 EQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGD 449
E + G + I+ + +LQ + T + V L VN L S GTVR+W
Sbjct: 596 EYGHVYTGSGDNTIKAW-SLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSL 654
Query: 450 DANEDIFTGGKLDRMRVCSDDTL 518
N + G+ + DDTL
Sbjct: 655 SDNSLLTVLGEETPGIIWRDDTL 677
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 SLQKGEG-ITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVN 398
SL+ G +TC G + + G ++ I+++ L +CI T G V L +
Sbjct: 253 SLEGHSGEVTCFAVGGQM---LYSGSVDKTIKMWD-LNTLQCIMTLKQHTGTVTSLLCWD 308
Query: 399 NTLVSAVSSGTVRVWGDDAN 458
L+S+ GT++VW N
Sbjct: 309 KCLISSSLDGTIKVWAYSEN 328
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 687 RRLPPCPPRRGQTPGRSPRPAGVVGANR 604
R P PPR GRSP P G G +R
Sbjct: 4 RSYTPSPPRGYGRRGRSPSPRGRFGGSR 31
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 405 LVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCS----DDTLFATGGEENDLKVWRVGES 572
++S GT ++W I T ++ S D +F TGG +ND+KVW + +
Sbjct: 154 IISGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAADKIF-TGGVDNDVKVWDLRKG 212
Query: 573 QPTFS 587
+ T +
Sbjct: 213 EATMT 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,286,789
Number of Sequences: 28952
Number of extensions: 363930
Number of successful extensions: 1295
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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