Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d10
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.8
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 4.2
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 4.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 5.5
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 7.3
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 7.3
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 25 7.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.6
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 444 FRQHDETSSQPKLAFRRQKLEIQCAV 367
F+ HDE ++ P L +R+ K I C +
Sbjct: 47 FQCHDELNTHPFLPWRKAKFHIPCVI 72
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 565 CNCRTIKLNGMRSSKKIKRQ 624
C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 3 FASYTLNRTDVMELYNIKYAIDPTNKIVIEQ 95
F T + D M YN K + DPT+ ++ ++
Sbjct: 80 FLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 368 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 264
FL+ I +W +HKAF+ I+++ FE R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 39 ELYNIKYAIDPTNKIVIEQV 98
+LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640
>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -3
Query: 382 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 203
+P +S+F + ++ + R W L+ ++++ N LP + +L I+ + + +K
Sbjct: 11 NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69
Query: 202 IIELTTP 182
+E TP
Sbjct: 70 YVEPATP 76
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 45 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 137
Y KYAI+ ++ + ++ ++ V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Frame = -2
Query: 356 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 267
F+I C W I + FI H + VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 45 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 137
Y KYAI+ ++ + ++ ++ V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.6
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Frame = +3
Query: 66 DPTNKIVIEQVDNVDAFVHIL--EPGQEVFDETLSRYHQF-------PGVVSSII--FTQ 212
D +K++I+ ++ V I+ E D T+ YH F P + ++ FTQ
Sbjct: 784 DIIDKVLIDMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQKHPSFLETMYPDFTQ 843
Query: 213 LVLNTIISVLSEDGSLL 263
L+LN I++L + LL
Sbjct: 844 LILNRAINLLGKPERLL 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,065
Number of Sequences: 5004
Number of extensions: 59950
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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