Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d09
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 144 4e-36
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 144 6e-36
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 0.82
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.9
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.5
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 4.4
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.4
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 7.6
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 7.6
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 7.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.6
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 144 bits (350), Expect = 4e-36
Identities = 69/98 (70%), Positives = 80/98 (81%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 384
ERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 144 bits (349), Expect = 6e-36
Identities = 71/109 (65%), Positives = 85/109 (77%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 417
ERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q
Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.82
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 396 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 235
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -2
Query: 179 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 69
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 232 SQVRGISIKLQEEERERRDNYVPEV 306
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 217 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 309
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 360 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 247
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 74 FLTVLVRTRPMAEVVQRCF 18
F T L R P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 197 PAILFLRGLVGMIAISSHILLFVSK 123
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 151 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 243
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 277 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 393
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 7.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +1
Query: 256 KLQEEERERRDNYVPEVSALEHDIIEVD 339
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 223 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 321
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,840
Number of Sequences: 5004
Number of extensions: 33498
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -