Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d06
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    27   0.16 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.8  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 254 LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTG 367
           L  + ++  VYP+     C   + E++ SD P +P  G
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 293  PASEGC-TSASSESAPSDQPIYPD 361
            P +  C   ASS  APS  P+ PD
Sbjct: 2279 PENTECHPDASSTMAPSTTPMVPD 2302


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 680 CPEAGFALDNAVW 642
           CP AG  +D+ VW
Sbjct: 532 CPFAGHPVDSVVW 544


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 491 TKEAQHHPIRHKHSHQA 541
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,113
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)