Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d05
         (204 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50680.1 68414.m05699 AP2 domain-containing transcription fac...    29   0.32 
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac...    27   1.7  
At5g03770.1 68418.m00341 3-deoxy-D-manno-octulosonic acid transf...    25   5.2  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    25   6.9  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    25   9.1  
At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    25   9.1  

>At1g50680.1 68414.m05699 AP2 domain-containing transcription
           factor, putative similar to RAV1 [Arabidopsis thaliana]
           GI:3868857
          Length = 337

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 103 QNCYENSKILIYLRDGYYFHLYR 171
           QNCY    +L  +RDG Y H +R
Sbjct: 96  QNCYTTETVLNMIRDGSYQHKFR 118


>At1g51120.1 68414.m05747 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV1
           GI:3868857 from [Arabidopsis thaliana]
          Length = 352

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 QNCYENSKILIYLRDGYYFHLYR 171
           Q CY    +L  +RDG Y H +R
Sbjct: 115 QECYTTEAVLNMIRDGSYQHKFR 137


>At5g03770.1 68418.m00341 3-deoxy-D-manno-octulosonic acid
           transferase-related similar to
           3-deoxy-D-manno-octulosonic acid transferase,
           Escherichia coli, PIR:JU0467; contains Pfam profile
           PF04413: 3-Deoxy-D-manno-octulosonic-acid transferase
           (kdotransferase)
          Length = 447

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 108 LLRKQ*NTYLFARW---LLFPFVSLIKNKFDI 194
           LL  + +T  F RW   LL P VSL+ +KF +
Sbjct: 156 LLNARMSTKSFKRWSSPLLLPLVSLLLSKFSL 187


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 74  IRHIYRFFYYKTVTKTVKYLFI 139
           IRH +  FYY TVT  +  L I
Sbjct: 355 IRHPFYIFYYSTVTLAIVQLRI 376


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 72  IHTPPPSGVLTCTTINITK 16
           +H PPP+  +T TTI+  K
Sbjct: 200 LHPPPPATTITTTTISNQK 218


>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 101 YKTVTKTVKYLFICEMVIISICIVN 175
           YKT+T+ V    +  ++ IS+C  N
Sbjct: 464 YKTITELVPLFVVALVIAISVCPFN 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,664,129
Number of Sequences: 28952
Number of extensions: 77272
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,070,560
effective HSP length: 47
effective length of database: 10,709,816
effective search space used: 214196320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)