Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c23
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.5  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   9.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 287  FNCKHSVVFLFSMTATSFMLVFRRNSFKLSKAISR 183
            F+C H + FL      +F L+F R++ KLSK  SR
Sbjct: 3085 FSCLHFIRFL-----NTFCLIFGRDANKLSKEKSR 3114


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 223 KTNIKEVAVMLNKKTTECLQLKQKIDKKIAQRILIKIYTIK**NHNEFN 369
           K N    A    KKT E LQ  Q++ K+IA++ + ++Y I     N++N
Sbjct: 604 KANATASAPNKKKKTVETLQ--QQVIKEIARKEIPRVYKII--QQNQYN 648


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 539  FNV-KFICNKLYLYTNMFILLHTII 468
            FN+ K IC K   + ++F LLH+II
Sbjct: 1353 FNIEKDICTKYVQFGHVFNLLHSII 1377


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 511 YIYTQICLFYYILLFVMMTSYLKLVLHVQF 422
           Y Y +    Y+  LF+M +  L LVLH +F
Sbjct: 122 YAYGESIYAYFHHLFIMDSFMLPLVLHHRF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,293
Number of Sequences: 5004
Number of extensions: 42764
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)