Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c23
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47143| Best HMM Match : TPR_2 (HMM E-Value=1.5e-10)                 29   3.2  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51435| Best HMM Match : Hydrolase (HMM E-Value=5.6)                 27   9.9  
SB_8787| Best HMM Match : Hydrolase (HMM E-Value=5.6)                  27   9.9  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      27   9.9  
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                27   9.9  
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       27   9.9  

>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 172 AKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKK 306
           +KT  + A  + +LL  +TN++ +    N+K TE LQL +++D K
Sbjct: 827 SKTMEEKAELSEELLLSQTNLQSLEKRCNEKQTETLQLYKELDLK 871


>SB_47143| Best HMM Match : TPR_2 (HMM E-Value=1.5e-10)
          Length = 577

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 130 DLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKI 309
           DL H +L  G  F+ +  LD+A+  LK +  + + + V  M        +Q   +  KKI
Sbjct: 501 DLGHAYLSCGDAFQGRKMLDLAVSGLKNMYGEEHPEVVRAMTVLGIAHTMQGNWQEGKKI 560


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 187  DIALDNLKLLRR-KTNIKEVAVMLNKKTTECLQLKQKIDKK 306
            D+  D+LK     +    EV  ++NK TT+ LQ   +IDK+
Sbjct: 1513 DVQSDSLKAASLVQHGSSEVGRLVNKNTTDVLQKTDRIDKR 1553


>SB_51435| Best HMM Match : Hydrolase (HMM E-Value=5.6)
          Length = 825

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 136 AHTFLKLGYLFRAKTCLDIALDNLKLLRR---KTNIKEVAVMLNKKTTECLQLKQKIDKK 306
           AH  ++  YL    +  D A D + L+R+    TN+  +A ++ +  +E LQL   I   
Sbjct: 517 AHIDMRAAYLGCEDSVFDGASDAIDLVRKYGFPTNVYRIADVVGRPLSEVLQLTGAILPT 576

Query: 307 IAQRILIKIYT 339
           +     +  YT
Sbjct: 577 LPGGAFVLAYT 587


>SB_8787| Best HMM Match : Hydrolase (HMM E-Value=5.6)
          Length = 815

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 136 AHTFLKLGYLFRAKTCLDIALDNLKLLRR---KTNIKEVAVMLNKKTTECLQLKQKIDKK 306
           AH  ++  YL    +  D A D + L+R+    TN+  +A ++ +  +E LQL   I   
Sbjct: 517 AHIDMRAAYLGCEDSVFDGASDAIDLVRKYGFPTNVYRIADVVGRPLSEVLQLTGAILPT 576

Query: 307 IAQRILIKIYT 339
           +     +  YT
Sbjct: 577 LPGGAFVLAYT 587


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 112 NVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNI 234
           N VE    AH FLK   +  A  CL  A + + L R   NI
Sbjct: 103 NAVEYLKAAHQFLKCRMVPEAAVCLRNAKERVLLARLHRNI 143


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -1

Query: 508 IYTQICLFYYILLFVMMTSYLKLVLHVQFCW*NKFKI*CHLFLHTKY*TR 359
           ++ ++ L + +LL + +  +L+L+LH++F    +  +   L LH +  TR
Sbjct: 299 LHFRLLLHFRLLLHLRLLLHLRLLLHLRFLLHLRLLLHLRLLLHFRLFTR 348


>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 64   FKLTPTTLYNNNMSILNVVEACDLAHT 144
            FK + T+ Y+NNM  L+     DL HT
Sbjct: 1148 FKASNTSTYSNNMGGLSDYRLLDLCHT 1174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,054
Number of Sequences: 59808
Number of extensions: 290035
Number of successful extensions: 627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)