Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c23
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    30   1.1  
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    27   8.1  
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    27   8.1  
At1g63100.1 68414.m07128 scarecrow transcription factor family p...    27   8.1  
At1g57780.1 68414.m06556 heavy-metal-associated domain-containin...    27   8.1  

>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein similar
            to lysosomal alpha-mannosidase SP:O09159 from [Mus
            musculus]
          Length = 1047

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 109  LNVVEACDLAHTFLKLGYLFRAKTCLD---IALDNLKLLRRKTNIKEVAVMLNKKTTECL 279
            L  +E  DL +  L+L +L+ A    D   IA   LK L     IKEV  M      E +
Sbjct: 929  LITLEELDLGNVLLRLAHLYEAGEDSDYSKIAKVELKKLFSGKMIKEVTEMSLSANQEKV 988

Query: 280  QLKQKIDKKI 309
            ++K+K+  K+
Sbjct: 989  KMKEKMKWKV 998


>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 196 LDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKIAQ 315
           L  ++L R    +KE   + N++TT C   K+ I    AQ
Sbjct: 877 LQEVELERTTKQLKEALAITNEETTRCKAAKEVIKSLTAQ 916


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +1

Query: 142  TFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKIAQRI 321
            + +  G L+  K CLD+A   L+      N KE+ ++ N++   C++ K K++  + +++
Sbjct: 936  SLISQGNLYHKKQCLDLAEKELQ------NAKEI-LIANQRDFSCVKCKLKLEVTLDKQL 988


>At1g63100.1 68414.m07128 scarecrow transcription factor family
           protein similar to GI:1497987 from [Arabidopsis
           thaliana] (Cell (1996) In press)
          Length = 658

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -3

Query: 524 ICNKLYLYTNMFILLHTIICDDDIISQTCFTRTILLVKQV*NMMSFIFAHKILNSL*FHH 345
           +CN L  Y+ MF  +HT +  D ++        +L  +++ N+++   +H+    + F H
Sbjct: 524 VCNSLKYYSAMFDAIHTNLATDSLMRVK--VEEMLFGREIRNIVACEGSHRQERHVGFRH 581


>At1g57780.1 68414.m06556 heavy-metal-associated domain-containing
           protein low similarity to myosin-like antigen GI:159877
           Onchocerca volvulus; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 264

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +1

Query: 130 DLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKI 309
           D A    K+   F  K+C+    D   L+    N+ ++   L KKT + +++  K +K  
Sbjct: 45  DCAKKIRKVACQFEVKSCITDIDDQKVLVSGDFNLHKLVKTLKKKTGKKIEIVTKNEKSS 104

Query: 310 AQRI 321
             ++
Sbjct: 105 EDKV 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,538
Number of Sequences: 28952
Number of extensions: 198689
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)