Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c21
         (303 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   2.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   2.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   3.8  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    20   6.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   8.7  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    19   8.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   8.7  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 200 TNKALTDFLRPLCETDQTRKTYAVPWNCNNIFHCNYYNV 84
           T + + +FL+ +   DQ + ++ +      + H NYY +
Sbjct: 312 TPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 350


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 200 TNKALTDFLRPLCETDQTRKTYAVPWNCNNIFHCNYYNV 84
           T + + +FL+ +   DQ + ++ +      + H NYY +
Sbjct: 545 TPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 583


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 200 TNKALTDFLRPLCETDQTRKTYAVPWNCNNIFHCNYYNV 84
           T + + +FL+ +   DQ + ++ +      + H NYY +
Sbjct: 545 TPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 583


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 121 IVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQT 2
           I+TI  +   ++ L +++   K +RIR L + +  +   T
Sbjct: 80  IITIVTLTSTSILLIVNAVFVKEKRIRTLLIKLSEIKENT 119


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -2

Query: 188 LTDFLRPLCETDQTRKTYAVPWNCNNIFHCNYYNV 84
           + +FL+ +   DQ + ++ +      + H NYY +
Sbjct: 2   MMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYEL 36


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 199 QTKH*QIFLGRC 164
           +TKH + FLG C
Sbjct: 531 KTKHVRAFLGLC 542


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 110 YCYNSTAQRMF 142
           YC+NS+  ++F
Sbjct: 182 YCFNSSVYKVF 192


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 47  TPCFRDS*RQTKEHCNNCNEIYCYNSTAQ 133
           +P  +DS R     C  CN  + Y    Q
Sbjct: 123 SPEVKDSSRDRPFTCEVCNRSFGYKHVLQ 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,256
Number of Sequences: 336
Number of extensions: 1195
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)