Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c21
(303 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.41
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 0.55
SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.72
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061) 29 0.72
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 27 2.2
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 27 2.2
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 26 5.1
SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16) 26 5.1
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27) 26 5.1
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 26 6.7
SB_44461| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94) 25 8.9
SB_34313| Best HMM Match : TLD (HMM E-Value=0.00057) 25 8.9
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 25 8.9
SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93) 25 8.9
SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8) 25 8.9
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 155 DQTRKTYAVPWNCNNIFHCNYYNVPLFVVNCPENTAYSYVSDGC 24
D+T Y P NC+ ++ C+ ++ F+ +CP ++ + C
Sbjct: 1456 DKTSDYYHDPRNCSRLYQCDIFH-RAFLKSCPHGLKWNIEKNAC 1498
>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 834
Score = 29.5 bits (63), Expect = 0.55
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 142 KHTLCRGIVTIYFIAIITMFLCLSSTVPKT 53
+H+LC I+ +++ + +TM LC S+ + +T
Sbjct: 320 EHSLCIAIIHLFYTSELTMSLCCSAGIGRT 349
>SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 96 IAMKYIVTIPRHSVCFSSLISFTQRPKKICQCF 194
+A KY T P S CF L +F + K+ +CF
Sbjct: 202 VASKYRATPPGTSTCFERLKTFVGQTLKLEECF 234
>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
Length = 1445
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 96 IAMKYIVTIPRHSVCFSSLISFTQRPKKICQCF 194
+A KY T P S CF L +F + K+ +CF
Sbjct: 216 VASKYRATPPGTSTCFERLKTFVGQTLKLEECF 248
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 72 DKQRNIVIIAMKYIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYIRRK 218
D +R+I I A + H + F ++FT P + Q + C Y R +
Sbjct: 2841 DTRRSITIAAWINVRAGSGHILSFGRGVAFTVTPTTVRQTYNCTYSRNR 2889
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 143 KTYAVPWNCNNIFHCNYYNVPL 78
KTYA P NCN CN++ V +
Sbjct: 1861 KTYAPPDNCNVGKSCNFFTVKI 1882
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 80 KEHCNNCNEIYCYNSTAQ 133
K HC NC I+C + T++
Sbjct: 374 KHHCRNCGLIFCSDCTSK 391
>SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)
Length = 424
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +3
Query: 84 NIVIIAMKYIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYIRRKIHRFAQRL 242
NIV++ + +++ + S C+ ++ F R + + F+CI + F + L
Sbjct: 188 NIVLLIVGFVIPVGIISACYLNIFRFL-RSQPVPPAFICIVFSTLVIMFPRFL 239
>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
Length = 855
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 121 IVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 11
I+TI+FI II++ + TV I M+ +++ T T
Sbjct: 99 IITIFFIIIISITTFIPVTVITNSFIVMIIIIITTTT 135
>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 80 LFVVNCPENTAYSYVSDGCIDFNSSD 3
++ + CP T + D C+D ++SD
Sbjct: 197 IYYMPCPAGTQWKNAEDACVDPSASD 222
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -3
Query: 145 EKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQ 5
E H C+ + + + + C+S V KT+ + +L+ +++T +A+
Sbjct: 12 EFHVACKHVG--FLLRRVICAYCVSKAVTKTKALALLSTILMTRSAR 56
>SB_44461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +3
Query: 42 RIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 137
R+R++ G +DDK + +II ++Y+ T+P+ ++
Sbjct: 37 RVRKLSADGFIDDKTLDYLIINVRYMGTLPQGAI 70
>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
Length = 472
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 24 TTIANIRIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 137
T + N R+R++ G +DDK + +II ++ + T+P+ ++
Sbjct: 76 TELVNRRVRKLSADGFIDDKTLDYLIINVRDMGTLPQGAI 115
>SB_34313| Best HMM Match : TLD (HMM E-Value=0.00057)
Length = 170
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 143 KTYAVPWNCNNIFHCNYY 90
KTYA P NCN CN++
Sbjct: 151 KTYAPPDNCNVGKSCNFF 168
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 83 EHCNNCNEIYC 115
EHC NC ++YC
Sbjct: 10 EHCQNCFKLYC 20
>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
Length = 1104
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2
Query: 104 HCNYYNVPLFVVNCPENTAYSYVSDGC 24
+ N + + +CP+ Y Y+SD C
Sbjct: 893 NANVHRADVMDTDCPKTAYYGYLSDTC 919
>SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8)
Length = 100
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 24 TTIANIRIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 137
T + N R+R++ G +DDK + +II ++ + T+P+ ++
Sbjct: 31 TELVNRRVRKLSADGFIDDKTLDYLIINVRDMGTLPQGAI 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,675,966
Number of Sequences: 59808
Number of extensions: 140386
Number of successful extensions: 464
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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