Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c21
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   1.1  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   1.1  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   1.1  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   1.1  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    26   6.0  
Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    25   7.9  

>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 145 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 11
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 145 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 11
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 145 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 11
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 108 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 221
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 163 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQT 2
           + ++ L   TLC  +V I+F+A I     L   +      R L +V + +  QT
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAE--RSLTIVTMIMAVQT 252


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 80  KEHCNNCNEIYCYNSTAQR 136
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 80  KEHCNNCNEIYCYNSTAQR 136
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 186 QCFVCIYIRRKIHRF 230
           QC VC Y R+K  RF
Sbjct: 383 QCMVCCYFRKKARRF 397


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 126 RHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 221
           ++ +CFS+L +       I   ++CI I RRKI
Sbjct: 178 KNIICFSALFTILHMTLPITPVYICILILRRKI 210


>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -2

Query: 230 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 132
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 63  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 95


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 15  KVNTTIANIRIRRVFGTVDDKQRNIVIIAMKYIVTIPRHSV 137
           +V  +I+N R   +   VDD+++ +++   K ++ +PR +V
Sbjct: 172 EVKGSISNHRYECI--DVDDQEKKLLVFTRKQLIPMPRFTV 210


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -2

Query: 230 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 132
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 90  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,805,447
Number of Sequences: 27780
Number of extensions: 112694
Number of successful extensions: 402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)