Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c21
(303 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07719.1 68415.m00969 expressed protein 31 0.20
At4g14740.2 68417.m02267 expressed protein 27 1.8
At4g14740.1 68417.m02266 expressed protein 27 1.8
At2g28270.1 68415.m03431 DC1 domain-containing protein contains ... 27 1.8
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 27 2.4
At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transfera... 27 3.2
At1g36670.1 68414.m04562 hypothetical protein 27 3.2
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 26 4.2
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 26 4.2
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 26 4.2
At3g13620.1 68416.m01714 amino acid permease family protein weak... 26 5.6
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 26 5.6
At1g48820.1 68414.m05463 terpene synthase/cyclase family protein... 26 5.6
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p... 25 9.7
At4g16090.1 68417.m02439 hypothetical protein contains Pfam prof... 25 9.7
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 25 9.7
At2g17740.1 68415.m02055 DC1 domain-containing protein 25 9.7
>At2g07719.1 68415.m00969 expressed protein
Length = 161
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 181 IFLGRCVKLIKLEKHTLCRGIVTIYFIAIITMFLC--LSSTVPK 56
IF G CV I LEK TL ++T +++ +F+ LSS K
Sbjct: 24 IFSGSCVLFISLEKRTLTGYMLTFILYSVLALFVSVWLSSAAGK 67
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 15 KVNTTIANIRIRRVFGTVDDKQRNIVIIAMKYIVTIP-RH 131
K+N + ++ R V GT K++NIV+ +K + P RH
Sbjct: 384 KMNQVMLKMKSRHVGGTFTKKKKNIVLDVIKNVPAWPGRH 423
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 15 KVNTTIANIRIRRVFGTVDDKQRNIVIIAMKYIVTIP-RH 131
K+N + ++ R V GT K++NIV+ +K + P RH
Sbjct: 384 KMNQVMLKMKSRHVGGTFTKKKKNIVLDVIKNVPAWPGRH 423
>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 248
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 110 IFHCNYYNVPLFVVNCPENTAYSYVSDGCIDFNSS 6
I H ++ N PL +++ P N +Y D C ++ S+
Sbjct: 67 IHHKSHTNHPLTLLHSPPNGLSTYTCDACGEYGSA 101
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 227 PMYFPSNINTNKALTDFLRPLCETDQTRKTYAVPWNCNNIFHCNYYNVPL 78
P+++ N N N + DF+ C T + +Y V C + FH PL
Sbjct: 111 PLFWCDNKNPN--IYDFICRACTTIEQGTSYYVCVTCGDQFHKECVGAPL 158
>At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 131 VPWNCNNIFHCNYYNVPLFVVNCPENTAYSYVSDGCIDF 15
+PW C+ N L+V +C +AY + DG + F
Sbjct: 136 IPWVCHVAEEFNIPCAVLWVQSCACFSAYYHYQDGSVSF 174
>At1g36670.1 68414.m04562 hypothetical protein
Length = 212
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 179 FLRPLCETDQTRKTYAVPWN 120
F L ET Q +KTY+ PW+
Sbjct: 111 FASKLEETSQNQKTYSTPWS 130
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 161 ETDQTRKTYAVPWNCNNIFHCNYYNVPLFVVNCPENTAYSYVSDGC 24
E + R V W NN +HC N F ++ E+T + ++ GC
Sbjct: 210 ENGRFRVLEDVSWRTNNKWHCLSVNWRTFKLSREEDTLH-FICIGC 254
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 173 RPLCETDQTR--KTYAVPWNCNNIFHCNYY 90
RPLC T R + + NNIF C+YY
Sbjct: 612 RPLCSTCHCRCPGPFILNKERNNIFFCSYY 641
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 26.2 bits (55), Expect = 4.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 80 KEHCNNCNEIYCYNSTAQRM 139
+ HC NC +++C T R+
Sbjct: 474 RHHCRNCGDVFCDKCTQGRI 493
>At3g13620.1 68416.m01714 amino acid permease family protein weak
similarity to SP|Q9WTR6 Cystine/glutamate transporter
(Amino acid transport system xc-) {Mus musculus};
contains Pfam profile PF00324: Amino acid permease
Length = 478
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 161 ETDQTRKTYAVPWNCNNIFHCNYYNVPLFVV 69
E D+ +KT+ + IF C Y +PLF V
Sbjct: 232 EVDEPQKTFPLALLIAVIFTCVAYLIPLFAV 262
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 128 PWNCNNIFHCNY--YNVPLFVVNCPENTAY 45
PW I N + + +F+ NCP+N+AY
Sbjct: 56 PWLVPAIVVANIALFAISMFINNCPKNSAY 85
>At1g48820.1 68414.m05463 terpene synthase/cyclase family protein
similar to terpene cyclase GI:9293912 from [Arabidopsis
thaliana]
Length = 561
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 48 RRVFGTVDDKQ-RNI-VIIAMKYIVTIPRHSVCFSSLISFTQRPKKICQ 188
RR+ +D Q +N+ +I+AMKYI C +L+ F + K Q
Sbjct: 218 RRIRKALDQPQHKNMEIIVAMKYIQFYEEEEDCDKTLLKFAKLNFKFLQ 266
>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
putative similar to laccase [Pinus taeda][GI:13661207]
Length = 557
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = -2
Query: 158 TDQTRKTYAVPWNCNNIFHCNYYNVPLFVVNCPENTAYSYVSD 30
T+ + ++ W+ + + + P ++ CP T SY+ D
Sbjct: 71 TNHVQYNMSIHWHGLKQYRNGWADGPAYITQCPIQTGQSYLYD 113
>At4g16090.1 68417.m02439 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 251
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 239 PLGKPMYFPSNINTNKALTDFLRPLCETDQTRKTYAVPWNC 117
PLGKP+ TN A+T C DQ+ K +AV C
Sbjct: 126 PLGKPIAIQQQAITNAAMT------CSPDQS-KDFAVAVKC 159
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 119 CNNIFHCNYYNVPLFVVNC 63
C N F+CN+ V F+++C
Sbjct: 376 CGNTFNCNHPVVRQFILDC 394
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 110 IFHCNYYNVPLFVVNCPENTAYSYVSDGCIDFNS 9
I H ++ + PL ++ P+N +Y D C ++ S
Sbjct: 63 IRHKSHPDHPLILLYSPQNNNSTYTCDACGEYGS 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,238,415
Number of Sequences: 28952
Number of extensions: 93764
Number of successful extensions: 308
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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