Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c20
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    53   3e-09
U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           40   1e-05
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           40   2e-05
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           38   1e-04
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           37   2e-04
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   5.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.6  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 27/56 (48%), Positives = 38/56 (67%)
 Frame = +3

Query: 333 RKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVL 500
           +++  N RER R Q+++ AFA LR+ +PT P D KLSK + L++A RYI  L  VL
Sbjct: 97  QRVMANVRERQRTQSLNEAFASLRKSIPTMPSD-KLSKIQTLKLAARYIDFLYHVL 151


>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = +3

Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRY 476
           N RER R  +++ AF  LR +VP+   D+KLSK E L+MA  Y
Sbjct: 3   NARERRRMNSLNDAFDRLRDVVPSLGNDRKLSKFETLQMAQTY 45


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRY 476
           N RER R   ++ AF  LR+++P+   D KLSK E L+MA  Y
Sbjct: 3   NARERRRMNGLNEAFDRLRQVIPSLDADHKLSKFETLQMAQTY 45


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSK 446
           N RER R Q+++ AFA LR+ +PT P D KLSK
Sbjct: 2   NVRERQRTQSLNEAFASLRKSIPTMPSD-KLSK 33


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
 Frame = +3

Query: 348 NCRERWRQQNVSGAFAELRRLVP----------THPPDKKLSKNEILRMAIRYIGLLCEV 497
           N RER R + V+  FA LR+ +P          +   +KKLSK E LRMA+ YI  L ++
Sbjct: 58  NARERNRVKQVNNGFANLRQHIPNFIAAAFESNSRGGNKKLSKVETLRMAVEYIRSLEDL 117

Query: 498 L 500
           L
Sbjct: 118 L 118


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 540 SGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEEYFRYGNEE 686
           +G L      PL+ QS           E  P+    H Q+++  YG ++
Sbjct: 146 NGVLGPTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQ 194


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 147 RKKAQPIMASDQESCSDEEPDSEM 218
           R K   + AS   +  DEEPD E+
Sbjct: 19  RAKIVKVAASPTSANPDEEPDPEL 42


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 147 RKKAQPIMASDQESCSDEEPDSEM 218
           R K   + AS   +  DEEPD E+
Sbjct: 19  RAKIVKVAASPTSANPDEEPDPEL 42


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 540 SGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEEYFRYGNEE 686
           +G L      PL+ QS           E  P+    H Q+++  YG ++
Sbjct: 148 NGVLGPTGSPPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQ 196


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 692 LIFFVAVPEILFLIVVQFGSWTVFVKTL 609
           L+F V     ++  +V+ G W  F K L
Sbjct: 123 LLFLVIFVLNIWCWIVEIGGWLAFTKQL 150


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 172 RRIKSLVRTRSLTVRC*VTTCVSP 243
           RRI + V+ RS+   C   TC  P
Sbjct: 74  RRIVARVQCRSIKNECPEPTCDEP 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,848
Number of Sequences: 336
Number of extensions: 3401
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)