Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c20
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.5  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   2.6  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   2.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   4.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.9  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 410 QSPKLRKRTTNVLLPPALSAVCEEFPWRSQ 321
           Q+PK  KRT  ++ P +L+  C   P+ ++
Sbjct: 100 QTPKTPKRTIQIVTPKSLNRTCNPVPFATR 129


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 505 GRRTTASRIRRIPVVWRSNANLR*VLNPEDFD*--NDSVLTKTVQEP 639
           G  +TASRI +I   ++ N N        +F    NDS L+KT+ EP
Sbjct: 571 GSSSTASRIDKIIYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEP 617


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +2

Query: 389 VCGASETGAHSSTR*EAIEERNTPDGYQVHRTSLRGPGMAEEPQR 523
           V  ASE+G  SS      EE NT    Q   TSLR  G  E  +R
Sbjct: 339 VLEASESGPKSSVLPLGFEEENTQSEKQDGNTSLRLHGKGEFLER 383


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = -3

Query: 282 SVLFSAVCCHHRCRGDT----GRHSASHCQAPRPNK 187
           + L  A+CCHH CR  T     R   SH     P +
Sbjct: 285 NALVIALCCHHHCRWRTLSTFAREQLSHWGISNPQE 320


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
 Frame = +3

Query: 261  RQPRT-IQNISEELSNLNPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKK 437
            ++P+T IQ +S +  + +P L+   R LF N    ++  N + A  E       +P  + 
Sbjct: 680  KKPKTFIQWVSRDKESNSPVLIAETR-LFNNL---FKCDNPA-ALKEQELAAQLNPESEV 734

Query: 438  LSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCF 617
            + KN I+   I     L +   W K  S    +       K E+P S + + +R+   C 
Sbjct: 735  VLKNSIIEPGIYD---LIKSAPWPKTDSSAGVD-------KAENPESVRFQAMRVGYFCL 784

Query: 618  DED 626
            DED
Sbjct: 785  DED 787


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 559 LIARLPEFSLFVTLWFF 509
           L+  LP +SLF TLW F
Sbjct: 602 LVQDLPSYSLFDTLWVF 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,130
Number of Sequences: 5004
Number of extensions: 55443
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)